Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02918 ATGGCATCAAGCGAGGGGTTTCTGACGGATGGTCAGAGAGAAATGTTGAAAATTGCGAGTCAGAATGTGGAGAATTTGTCGTCGTCGCCGAAATCTCCGTCATCCTTGCTTGGTGAACATCATCATCATCATCATATGAGAGCTCCTTCTGGGGGTGGTAAGGCAGAAACTTCCGGAATTGCTGTCAGGCATGTTCGCCGATCGCACTCGGGAAAGTTTGTGCGGGTCAAGAAGGACGGTGCAGGTGGTAAGGGCACTTGGGGAAAATTGCTTGATACCGATGGTGAATCTCATATAGACAGAAATGATCCAAACTATGACAGTGGTGAGGAACCTTATCGATTGGTTGGGTCTACTGTTACTGATCCGTTAGATGAATTCAAGAAAGCAATAGTATCCATCATAGAGGAATATTTCAGTACCGGGGACTTCAACTTGGCTGCATCTGACCTCAGAGAACTTAGCTCAAATGAATATTATCCATACTTCATTAAGCGTCTTGTGTCCATGGCCATGGACAGGCATGATAAAGAGAAAGAAATGGCTTCGGTTTTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTCAGGATGGATTTTTCATGCTTATTGAATCGGCCGATGATCTTGCGGTGGACATACTAGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGATATCCTTCCTCCAGCCTTTCTTGCCAGGGCCAAGAAGGCTCTTCTAGAATCTTCCAAGGGAGGTCAGGTAATCCAGATTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAAGCGATGGGGTGGTAGCACTCACTTCACTGTTGAAGATGTGAAGAAGAGAATTGCTGATTTACTAAGAGAATATGTGGATAGTGGTGACACATTTGAAGCATGTAGGTGTATACGTGAGTTAGGGGTTTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTCTGGTACTTTCCATGGAGATCCACTCAGCAGAACCTCTTATGTTTAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGTCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGTCCTAGATGATCTTGCTCTTGATATTCCTTCAGCGAAAACTTTGTTTCAGTCATTGGTACCTAAAGCTATATCAGAAGGATGGCTTGATGCTTCATTTATGAAACCCTCTGGGGAAGATGGGGATATTCAATTTGAAGATGAAAAGGTGAGGAAGTATAAAAAGGAGGTTGTAACTATTATTCATGAATATTTTCTCTCTGATGACATCCCTGAGCTCATACGAAGCCTTGAGGATCTTGGGGCACCTGAGTATAACCCGATATTTTTGAAGAGGCTAGTGACTCTTGCTATGGACAGAAAAAATCGGGAAAAGGAAATGGCATCAGTACTACTATCTGCTCTTCATATTGAGATCTTCTCAACTGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACTGCACTGGATATATTGGATGCTTCAAATGAACTTGCTCTTTTTTTAGCTCGAGCTGTGATTGATGACGTACTGGCCCCTCTGAATTTGGAAGAAATTGGAAGCAGGTTGCCCCCAAAATGTAGTGGGAGTGAAACTGTACGGATGGCTCGTTCACTTGTTGCTGCTCGTCATGCCGGTGAGAGGCTGTTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTGGAAGATGCTAAGGACAAGATCATGAAGCTCTTGGAGGAGTATGAGAGTGGAGGTGTTGTGGGTGAAGCATGCCAGTGTATTCGTGACCTAGGAATGCCTTTCTTCAACCATGAGGTTGTGAAGAAAGCTTTGATTATGGCCATGGAGAGGAAGAATGACAGGATGCTGGATCTTCTGCAGCAATGTTTTAGTGAAGGTCTGATCACCATCAATCAGATGACTAAAGGGTTCACCCGAATCAAGGATGGTCTTGATGATCTTGCTCTGGACATTCCGAATGCAAGGGAAAAATTCAGCTTCTATGTGGAGCATGCCCTGAGGAAGGGCTGGCTTGTACCATCATTTGATTCGACTGCCACGGATGTCTAA 2124 0.4449 MASSEGFLTDGQREMLKIASQNVENLSSSPKSPSSLLGEHHHHHHMRAPSGGGKAETSGIAVRHVRRSHSGKFVRVKKDGAGGKGTWGKLLDTDGESHIDRNDPNYDSGEEPYRLVGSTVTDPLDEFKKAIVSIIEEYFSTGDFNLAASDLRELSSNEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIQDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAKKALLESSKGGQVIQIAEKSYLSAPHHAELVEKRWGGSTHFTVEDVKKRIADLLREYVDSGDTFEACRCIRELGVSFFHHEVVKRALVLSMEIHSAEPLMFKLLKEAAEEGLISSSQMVKGFSRLAEVLDDLALDIPSAKTLFQSLVPKAISEGWLDASFMKPSGEDGDIQFEDEKVRKYKKEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKRLVTLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVGEACQCIRDLGMPFFNHEVVKKALIMAMERKNDRMLDLLQQCFSEGLITINQMTKGFTRIKDGLDDLALDIPNAREKFSFYVEHALRKGWLVPSFDSTATDV. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02918 707 Gene3D - 119 267 - -
Seca4g02918 707 Gene3D - 416 567 - -
Seca4g02918 707 PANTHER PROGRAMMED CELL DEATH 4 3 701 IPR039778 GO:0045892
Seca4g02918 707 SUPERFAMILY ARM repeat 422 581 IPR016024 -
Seca4g02918 707 Gene3D - 575 704 - -
Seca4g02918 707 Gene3D - 276 409 - -
Seca4g02918 707 MobiDBLite consensus disorder prediction 23 58 - -
Seca4g02918 707 Pfam MA3 domain 292 402 IPR003891 -
Seca4g02918 707 Pfam MA3 domain 127 238 IPR003891 -
Seca4g02918 707 Pfam MA3 domain 426 535 IPR003891 -
Seca4g02918 707 Pfam MA3 domain 589 696 IPR003891 -
Seca4g02918 707 ProSiteProfiles MI domain profile. 126 247 IPR003891 -
Seca4g02918 707 FunFam programmed cell death protein 4 118 269 - -
Seca4g02918 707 SUPERFAMILY ARM repeat 584 701 IPR016024 -
Seca4g02918 707 ProSiteProfiles MI domain profile. 587 706 IPR003891 -
Seca4g02918 707 MobiDBLite consensus disorder prediction 91 108 - -
Seca4g02918 707 FunFam programmed cell death protein 4 414 568 - -
Seca4g02918 707 SMART ma3_7 127 238 IPR003891 -
Seca4g02918 707 SMART ma3_7 425 536 IPR003891 -
Seca4g02918 707 SMART ma3_7 291 402 IPR003891 -
Seca4g02918 707 SMART ma3_7 588 697 IPR003891 -
Seca4g02918 707 MobiDBLite consensus disorder prediction 85 110 - -
Seca4g02918 707 SUPERFAMILY ARM repeat 124 284 IPR016024 -
Seca4g02918 707 ProSiteProfiles MI domain profile. 290 411 IPR003891 -
Seca4g02918 707 SUPERFAMILY ARM repeat 287 407 IPR016024 -
Seca4g02918 707 ProSiteProfiles MI domain profile. 424 545 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02918 Seca-Chr4 50228477 50232307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02918 591 687 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 2.03e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02918 - - gmx:100815729 1252.65