Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02914 ATGGCAGGTTCAGAGGCAAACGGCGACGTTTTCCCATGGCTGAAATCGATGCCGGTAGCGCCAGAGTACCGGCCAACCGCGGCGGAGTTCGAAGATCCAATTGCTTACATTTTCAAGATCGAGAAAGAAGCTTCAAAGTACGGCATCTGCAAAATCATTCCACCGTTCCCACCGTCGTCAAAGAAAACCGCCATAGCCAACCTAAACCGTTCACTCCCCAACTCCACATTCACGACACGTCAGCAGCAGATCGGGTTCTGTCCCCGTAAGCCCCGCCCCGTGCAACGCCCCGTTTGGCAGAGCGGTGACCACTACACCTTTCATGAATTCGAGACCAAGGCCAAGTCCTTTGAGAAAACTTACCTGAAGCGTCACCATAACAAGAGCAGTAGTAAAAATCAAAATCCCCTTGAAACTGAGACACTCTTCTGGAAGGCCACCGTAGATAAACCCTTTTCCGTTGAATATGCCAATGACATGCCTGGCTCTGCTTTCTCCCCCAAATGCCGTCACGCTGGTGAGCCTGCCTCGCTTGCTCACACTGCTTGGAACATGAGAGGGGTTTCAAGGGCCAATGGTTCTTTATTGAGGTTCATGAAGGAGGAGATTCCTGGGGTAACTTCCCCAATGGTGTATGTTGCCATGCTCTTCAGCTGGTTTGCTTGGCATGTCGAGGACCATGACCTTCACAGCTTGAATTACCTCCACATGGGTGCTGGAAAGACCTGGTACGGCATCCCCAGAGAAGCTGCCGTTGCATTTGAGGAAGTTGTTAGGGTTCATGGCTATGGCGGAGAGATAAACCCTCTCGTTACTTTTGCCATTCTTGGTGAGAAAACCACAGTAATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACGTTTCCAAGAGCCTACCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGACTTTGTGCTGAACCTCGAAGTTCTCGTCTTAAAGATAAGAAGAAGGATGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGGTACAGAACAATGATCTGCTTCATGTACTCGGAAAAGGTTCTTCTGTAGTACTTCTTCCTCGCAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGCATTGGTTGCCAACAACGAAAAGTGAACCCTGGGTTTTCTTTCAATGTAAGCAATTCCAAGGGAATAAATTCATCAAAAGGTTTTGTTTCTGATGATCTGGTGTTCAACAGGAATCATGGAATGAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTACATTGGGTGAAAGGAAAAGGATTTCCTCGTTCAATGCAAATGGTAACACAAGCACTTCAGGTTCTGATCCACTTCAAAGAGACACTGAAAGTGAAACCGGTGAAGGAGATGGTTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAGCAATAAATTTACTGTTGCAGATGAAGATGCAAATATTCCTGAGCCAAATATGTATACAGGACAGACTGCAGATCGGAATTATGAGGATGCTTTAAATACTGAAAGAGGAAAAGGCAATACAGCTCTTGGATTATTGGCTTCAGCATATGAAGAGCAGGGTGACTCAGATATTGCAGTTGAAGGTCATGGATCAAATGTGATGAGCTCTACATCAGGAAGATTACCTTCTCATTTTCAAGATTCCCATGCTAATCCCATGGCTAGACTTGATAGGGGAGATGATATTCCTTCAAAGAGTGCCAGTTATGAGGATTATATGCATTATAGATTTGAGTATAATTTGAGTCATCAGTCTTTTGACCACTCTGTAGAGAAACAGGATTATAAACTCACTTCAGGAGTTGCTTTTAAAAATAAAAGGGCAGTGCCTAATACCACCTCTAATTGTTCCCAAGACGCTCATGATGTTGAAAATTCATTGTCAGTCAAGGCTATGGTCCCCGTCAATAATAAAAATGCTTTGGTACCACAGACTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGACAGAGGCTGAAGCGAAGTTGGCAGCAGAAGAGTTGGGGATTGATTACATGTGGAAGAATATTGCATACAGGCATGCCACCAAGGAGGATGAGGAGAGGATCCAGTCAGCCCTGGATAGTGAGGATGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTACAGTGCAAGTCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCACCCGTAGAACCAAAGGTCTATCGGAGAAGGGTCAACAAGCAGAAAAAGGTAGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTGTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGATATCACCTGATGAGAAAATTGAGAGATTGGAAAGTACCCCTAAAAGCGAAACTAATATCAGAAAATCAGGTAGGAAAAGGAAAATGACTGTACAGAGTAAGCAAACAAGGAAAGGAAGTTTTGCGGAGAAAGATGTGGTTTCGGATAATTCCACTGAAGATGAACCCAAGCCAAAGAGGATTGTTAGAAGCAAGCAAGCTAGGCATATTGAGAAAGATGGTGCAGCTTTGGATGGGGATGATTCTCCTCCATATCATCGTATAAAACCCATAAGCAAGCAAACAAATTGCACTGAAAGTGATGCAGTTTCTGATGATTCGCATAATGATAAATATCAGATACGGGATAGAAGGAATTTTAAGGTCAAAAAAGCTAAATTTATTGACAATGATGTGACTTCAGATGATACATTGGACCATGATTCTGATTGGCAGCAGAGGGGAGAACTTAGAAGCAAGCCTGGTGAAGACACAGAGAGAGATTCAATTTCAGAGGATTCTTTGGATATTGGCTCCCTTCAGCTGCACGGGAAGACTTCTAAAAGCAAGCATGCGAAATACATTAGTGAAGAAGATGCAACTTCTGATGACCAAATGGAGAATCATTGTCAGAAGCAGCAAAGGAGAATTCCTAAAAGCAGGCAAGGCAAGTGCCTAGATGAAAAAGATATAATGATATCTGATGACCAACTGGAGCTGAACATGCAGAAGCTGTGTCGGAGGAATCCTAAAAATAAACAAGCCAAACACCTCACTGAAGAGGATACCATATCAGATGACCAAGTGAAGGCCCATTGTCGCAAGTATCAAAGTAGCACTCCTAAAGGCAGGCAAGCCAAATGTGTAGCAGGGGAAAATGTAATGTCTGATGACCAATTGGAGGATGACTTTCAGAAGCAGCAAACAAGTTTTTCTAGACGAAGGAAAAACAAAGGCATTGATAGAGAAGTTAAAAAAGTAATGTCTGATGACCGATTGGAGGATCACCTTAAGAAGCCGCAGAGAAGATTTCCTAGGAGCAGACAAAACAAACGCATTGATAAAGAAGTTATGGATGACTTGGCAGAAAATAATTCTCATCTACTACATAGAACTCCTAAAAGGAAGCAAGTTGAATGCATGGATGAAGATGATATGAAATCAGATGACGAAATGGAAGATGATTCTCCTCAGCAGCACAGGAGAACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCTCTCCAAGTGAAAAACCAGACATCTCGGACAGTAAAGCGAGGGGCTCGGATGCTGATGAAATCAAAGGCTCCTCAGCAAGTAAAACAGCCTTCTCATTTGCGGAATAAGCAATCTGGTAACTCCAGAGAGTTTAATTTACATATGGAAGAGGAAGAAGGCGGACCTAGCACGCGCCTTAGGAAGAGAGTATCAAAAGCTCAGGAGTCTGAAGGAAAATTGAAAGACAAGCAAACCAAAAGGAAAAAGGTGAAGAACGCTACAGCTGCAAAGGTATCAGCTGGCCATGCCAAAATGAAAGATGAGGAATCAGAATACCAGTGTGACATTGAGGGGTGCACAATGAGTTTTAGGTCAAAACAGGAGCTGGTGCATCATAAGAAAAATATCTGTCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGCCCCTTGAGGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGTATGTGCTGAGCCAGGTTGTGGGCAAACTTTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCAGCAAAAAAGTGTCGTCAATAG 4746 0.4328 MAGSEANGDVFPWLKSMPVAPEYRPTAAEFEDPIAYIFKIEKEASKYGICKIIPPFPPSSKKTAIANLNRSLPNSTFTTRQQQIGFCPRKPRPVQRPVWQSGDHYTFHEFETKAKSFEKTYLKRHHNKSSSKNQNPLETETLFWKATVDKPFSVEYANDMPGSAFSPKCRHAGEPASLAHTAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGIPREAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGLCAEPRSSRLKDKKKDEGETVIKELFVQDVVQNNDLLHVLGKGSSVVLLPRSSVDISVCSKLRIGCQQRKVNPGFSFNVSNSKGINSSKGFVSDDLVFNRNHGMKQEKSFYSVKDKFTTLGERKRISSFNANGNTSTSGSDPLQRDTESETGEGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTVADEDANIPEPNMYTGQTADRNYEDALNTERGKGNTALGLLASAYEEQGDSDIAVEGHGSNVMSSTSGRLPSHFQDSHANPMARLDRGDDIPSKSASYEDYMHYRFEYNLSHQSFDHSVEKQDYKLTSGVAFKNKRAVPNTTSNCSQDAHDVENSLSVKAMVPVNNKNALVPQTDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKTEAEAKLAAEELGIDYMWKNIAYRHATKEDEERIQSALDSEDAIPGNGDWAVKLGINLFYSASLSRSPLYSKQMPYNSVIYYAFGRSSPASSPVEPKVYRRRVNKQKKVVAGKWCGKVWMSNQVHPLLAKRDCEDVEDEKSLHGWISPDEKIERLESTPKSETNIRKSGRKRKMTVQSKQTRKGSFAEKDVVSDNSTEDEPKPKRIVRSKQARHIEKDGAALDGDDSPPYHRIKPISKQTNCTESDAVSDDSHNDKYQIRDRRNFKVKKAKFIDNDVTSDDTLDHDSDWQQRGELRSKPGEDTERDSISEDSLDIGSLQLHGKTSKSKHAKYISEEDATSDDQMENHCQKQQRRIPKSRQGKCLDEKDIMISDDQLELNMQKLCRRNPKNKQAKHLTEEDTISDDQVKAHCRKYQSSTPKGRQAKCVAGENVMSDDQLEDDFQKQQTSFSRRRKNKGIDREVKKVMSDDRLEDHLKKPQRRFPRSRQNKRIDKEVMDDLAENNSHLLHRTPKRKQVECMDEDDMKSDDEMEDDSPQQHRRTLRSKQSKPKTLQQMKQANSLQVKNQTSRTVKRGARMLMKSKAPQQVKQPSHLRNKQSGNSREFNLHMEEEEGGPSTRLRKRVSKAQESEGKLKDKQTKRKKVKNATAAKVSAGHAKMKDEESEYQCDIEGCTMSFRSKQELVHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKCRQ. 1582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1302 1455 - -
Seca4g02914 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1488 1517 IPR013087 -
Seca4g02914 1581 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 983 1032 - -
Seca4g02914 1581 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1159 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 502 530 - -
Seca4g02914 1581 FunFam Probable lysine-specific demethylase ELF6 1515 1544 - -
Seca4g02914 1581 SUPERFAMILY Clavaminate synthase-like 101 360 - -
Seca4g02914 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1550 1574 IPR013087 -
Seca4g02914 1581 Coils Coil 1426 1446 - -
Seca4g02914 1581 FunFam Probable lysine-specific demethylase ELF6 13 350 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1128 1161 - -
Seca4g02914 1581 SUPERFAMILY beta-beta-alpha zinc fingers 1528 1573 IPR036236 -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1403 1436 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1384 1402 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 955 1055 - -
Seca4g02914 1581 SUPERFAMILY beta-beta-alpha zinc fingers 1489 1521 IPR036236 -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1077 1161 - -
Seca4g02914 1581 SMART cupin_9 177 346 IPR003347 -
Seca4g02914 1581 Pfam JmjC domain, hydroxylase 210 328 IPR003347 -
Seca4g02914 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1518 1547 IPR013087 -
Seca4g02914 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1520 1542 IPR013087 -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1077 1111 - -
Seca4g02914 1581 SMART c2h2final6 1548 1574 IPR013087 -
Seca4g02914 1581 SMART c2h2final6 1518 1542 IPR013087 -
Seca4g02914 1581 SMART c2h2final6 1488 1512 IPR013087 -
Seca4g02914 1581 SMART c2h2final6 1465 1487 IPR013087 -
Seca4g02914 1581 FunFam Probable lysine-specific demethylase ELF6 1545 1574 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1302 1321 - -
Seca4g02914 1581 Pfam jmjN domain 21 54 IPR003349 -
Seca4g02914 1581 Gene3D Cupin 13 350 - -
Seca4g02914 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1490 1512 IPR013087 -
Seca4g02914 1581 SMART JmjN_1 19 60 IPR003349 -
Seca4g02914 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1548 1579 IPR013087 -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 502 519 - -
Seca4g02914 1581 Gene3D Classic Zinc Finger 1484 1574 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1269 1290 - -
Seca4g02914 1581 ProSiteProfiles JmjC domain profile. 177 346 IPR003347 -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 955 969 - -
Seca4g02914 1581 MobiDBLite consensus disorder prediction 1347 1372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02914 Seca-Chr4 50174428 50183581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02914 766 867 C2H2 Transcription Factor Family AT5G04240 32.353 1.83e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g02914 JmjC 5.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02914 - - gmx:100775271 2429.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02914 4 50174428 50183581 Seca4g02914 4 50174428 50183581 ECH