Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02913 ATGGCGCTCACGACAATGAGTTCCACAGCCCCTGCTTTAGAGCTTAACTTCCTCAGTCTACATATTAGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGTTGGAGAATGTGATTCCCCTTCAGGTTATGGTAATGGCAGTTCTATTCCATTACACGGTGTATCACAATCATCTATACGCTCATGGTCTTCTACTAGGACATTAAATGAAACTGCTCCCTTTATTGCCAATGATACTTTCGCCGACTCCAGGGTTTCTCCCCAAAGTTCTAAATGGAATGGATATCAGGCGCCTGTCTATTTATCTGAGAGGAGTATACGTCCACCTTCATCATATGTCATGAACAACCCTGCTATTGAAAGAAATGTTTATGTGCGCCTTAAAAAGCAGATGCCAGTTGATGAATTTCCAGAAAGGCCTGGTGAACCCGAATGGAGCTACTTCTTAAAAAGTGGGGATTGCAAATTTAAATCTAACTGTAAATTTCATCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGTATTACATAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAGTTTAACCACACAAGAGGAAAGTGTTCAACTTCAACAGCCCCGGTTTCAGAGCTTAACTTCCTCGGTCTTCCTATTCGTTTGGGAGAGAAAGAGTGCGTTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGGTGTTGGAGTATGTGATTCCCCTTCAGGTTATGGTAATGGCAGTTCTATTCCATTACACGGTGTATCACAATCATCTATACCCTCATGGTCTTCTACTAGGACATTAAATGAAACTTCTCCCTTTATTGCCAATGATACTTTCGCCGACTCCAGGGGTTTCTCCCCAAAGTTCTGA 1005 0.4269 MALTTMSSTAPALELNFLSLHISLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGECDSPSGYGNGSSIPLHGVSQSSIRSWSSTRTLNETAPFIANDTFADSRVSPQSSKWNGYQAPVYLSERSIRPPSSYVMNNPAIERNVYVRLKKQMPVDEFPERPGEPEWSYFLKSGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPYYIRSGGCKFGKACKFNHTRGKCSTSTAPVSELNFLGLPIRLGEKECVYYMRTGSCKFGANCKFNHPDPTGVGVCDSPSGYGNGSSIPLHGVSQSSIPSWSSTRTLNETSPFIANDTFADSRGFSPKF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02913 334 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Seca4g02913 334 SMART c3hfinal6 23 50 IPR000571 GO:0046872
Seca4g02913 334 SMART c3hfinal6 159 186 IPR000571 GO:0046872
Seca4g02913 334 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Seca4g02913 334 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Seca4g02913 334 SUPERFAMILY CCCH zinc finger 24 50 IPR036855 GO:0046872
Seca4g02913 334 ProSiteProfiles Zinc finger C3H1-type profile. 159 187 IPR000571 GO:0046872
Seca4g02913 334 Gene3D - 6 59 - -
Seca4g02913 334 Gene3D - 232 281 - -
Seca4g02913 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 26 49 IPR000571 GO:0046872
Seca4g02913 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 273 IPR000571 GO:0046872
Seca4g02913 334 ProSiteProfiles Zinc finger C3H1-type profile. 23 51 IPR000571 GO:0046872
Seca4g02913 334 PANTHER PROTEIN PHOSPHATASE RELATED 8 207 - -
Seca4g02913 334 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Seca4g02913 334 SUPERFAMILY CCCH zinc finger 248 274 IPR036855 GO:0046872
Seca4g02913 334 Gene3D - 163 231 - -
Seca4g02913 334 Pfam RNA-binding, Nab2-type zinc finger 207 224 - -
Seca4g02913 334 Pfam RNA-binding, Nab2-type zinc finger 167 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02913 Seca-Chr4 50157363 50166228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02913 2 64 C2H2 Transcription Factor Family AT5G18550 37.500 5.05e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g02913 zf-CCCH 6.9e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02913 - - gmx:100809906 348.206