Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02912 ATGTTTTTGAACAACCCTGCTATTGAAAGAAATGTTTATGTGCACCTTAAAAAGCAGGTGCCAGTTGACGAATTTCCAAAAAGTCCTGGTGAACCCGAATGCAACTACTTCTTAAAAAGTGGGGATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCCAACCTCAGTGA 204 0.3775 MFLNNPAIERNVYVHLKKQVPVDEFPKSPGEPECNYFLKSGDCKFKSNCKFHHPKNRVTRLPPCQPQ. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02912 67 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 29 55 IPR000571 GO:0046872
Seca4g02912 67 SUPERFAMILY CCCH zinc finger 33 58 IPR036855 GO:0046872
Seca4g02912 67 PANTHER PROTEIN PHOSPHATASE RELATED 14 64 - -
Seca4g02912 67 Gene3D - 12 66 - -
Seca4g02912 67 ProSiteProfiles Zinc finger C3H1-type profile. 28 56 IPR000571 GO:0046872
Seca4g02912 67 SMART c3hfinal6 28 55 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02912 Seca-Chr4 50150179 50151363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02912 25 64 C2H2 Transcription Factor Family AT5G16540 57.500 1.23e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g02912 zf-CCCH 1.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02912 - - gmx:100786894 122.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01674 12 18280825 18284724 Seca4g02912 4 50150179 50151363 ECH
Seca4g02912 4 50150179 50151363 Seca4g02912 4 50150179 50151363 ECH
Seca12g01674 12 18280825 18284724 Seca4g02912 4 50150179 50151363 PCT