Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02911 ATGTGGTGGATAATGGCGCAGTGGGCTTTCTTCCAACTTTGTAGGAATCACAAAGATGGCGCTCACAACAATGGGTGTTCAAGTTCAACAGCCCCGGCTTCAGAGCTTAACTTCCTCGGTCTACCTATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAACTGTTGGAGTATGTGATTCGCCTTCAGGTTATGGTAATGGCAGTTCTATTCCATTACACGGCGTATCACAATCATCTATATCCTCATGGTCTTCTACTAGGACATTAAATGAAACTGTTCCCTTTATTGCCAATGATACTTTCGCCGACTCCAGTGGTTTCTCCCCAAAGTTCTGA 396 0.4444 MWWIMAQWAFFQLCRNHKDGAHNNGCSSSTAPASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTTVGVCDSPSGYGNGSSIPLHGVSQSSISSWSSTRTLNETVPFIANDTFADSSGFSPKF. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02911 131 PANTHER PROTEIN PHOSPHATASE RELATED 22 114 - -
Seca4g02911 131 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 70 IPR000571 GO:0046872
Seca4g02911 131 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Seca4g02911 131 Gene3D - 13 79 - -
Seca4g02911 131 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Seca4g02911 131 SUPERFAMILY CCCH zinc finger 44 72 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02911 Seca-Chr4 50149594 50150168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02911 36 72 C3H Transcription Factor Family AT1G04990 67.568 1.79e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g02911 zf-CCCH 8.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02911 - - gmx:100776363 153.295