Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02910 ATGCTAGAAGCAGAAATTAGGGAATCTGCCTCCAATTTGTACACTTCAATGGAAGAGAAATCAACCTCCGGGCAAAATCTTACTACAGCTTCTGGTTTTGTAAAAAGTCAAGAATTTGATATTGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAACTGTTGGAGTATGTGATTCGCCTTCAGGTTATGGTAATGGCAGTTCTATTCCATTACACGGTGGATCACAATCATCTATATCCTCATGGTCTTCTACTAGGACATTAAATGAAACTGCTCCCTTTATTGCCAATGATACTTTCGCCGACTCCAGGGGTTTCTCCCCAAAGTTCTGA 384 0.4115 MLEAEIRESASNLYTSMEEKSTSGQNLTTASGFVKSQEFDIGEKECPYYMRTGSCKFGANCKFNHPDPTTVGVCDSPSGYGNGSSIPLHGGSQSSISSWSSTRTLNETAPFIANDTFADSRGFSPKF. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02910 127 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 66 IPR000571 GO:0046872
Seca4g02910 127 SUPERFAMILY CCCH zinc finger 43 68 IPR036855 GO:0046872
Seca4g02910 127 PANTHER PROTEIN PHOSPHATASE RELATED 42 110 - -
Seca4g02910 127 ProSiteProfiles Zinc finger C3H1-type profile. 40 68 IPR000571 GO:0046872
Seca4g02910 127 Gene3D - 6 75 - -
Seca4g02910 127 SMART c3hfinal6 42 67 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02910 Seca-Chr4 50144886 50146256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02910 41 68 C3H Transcription Factor Family AT1G04990 67.857 3.38e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g02910 zf-CCCH 2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02910 - - gmx:100776363 124.02