Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02909 ATGGAACCCTCTGAATCCGAATCAATTGGTTCCTCCATCAAAGACCCACAATTGGGTTCTCAGGGTGAAACTTTTCCCCACCACGATCACGATCCTCAAGCCTCAGATCTCAATAACCATGCCCTGGTTGATGATGCACTTGGCGGGGAGCTCCAGAACAAGTTGGATTTGAAAGATGGGGATGAAACTGAGAATGAAGTTTCAAACTTTGAAGCTGATGATGAACAATTGTGTGGTGAAGCTGCTGCCCCAGAACCTGACAAGGGCCAAAGGTGTGGTGATGATGATGGTTGGAATGGTGGTGATGAGAGCTGTAATTGGATAGAGAATGAGAATGTGAACGAGAGTGGGAGTGATAAGGTGGGTGGAGATGTTAATGAAGTGGATGGTGATGAAGTGGAGAACAAGGATGACAAAAGCAGTGTAAGAGCTCAACAGTACCCGTTGAGGCCCGATGCTGAGGACTGTGCATTTTATCTCAAGACTGGGACTTGCAAATATGGATTCAATTGCAAGTTTAATCACCCGGTTAGGCGAAAAAACCAGATGAAGGCTGTTAAAGAGAATGAAGGAGAAAGAGATGAACTGGAGGAAAAATTAGGCCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGTATTCAAGTTCAACAGCCCCGGCTTCAGAGCTTAACTTCCTCGGTCTACCTATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGTTGGAGTATGTGATTCCCCTTCAGGGTATGGTAATGGCAGTTCTATTCCATTACAAGGTGTATCACAATCATCTATACCCTCATGGTCTTCTACTAGGACATTAAATGAGACTGCTCCCTTTATGCCAATGATACTTTCGCCGACTCTAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCGCCTGTCTATTTATCTGAGAGGAGTATACATTCACCTTCATCATATGTCATGAACAACCCTGCTATTGAAAGAAATGTTTATATGCACCATAAAAAGCAAATGCCGGTTGACGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACACATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCGCCACCATCAACTAAGCCTGGACTTGATCAACAATCCTCCTACACAAACTCAGCTATTGTTGAGGTGGCTGGGATGGGTGGAAGTGGAGGTGCCAGTGATGTGACAATTCAGCAGCCTGTGTAA 1497 0.4409 MEPSESESIGSSIKDPQLGSQGETFPHHDHDPQASDLNNHALVDDALGGELQNKLDLKDGDETENEVSNFEADDEQLCGEAAAPEPDKGQRCGDDDGWNGGDESCNWIENENVNESGSDKVGGDVNEVDGDEVENKDDKSSVRAQQYPLRPDAEDCAFYLKTGTCKYGFNCKFNHPVRRKNQMKAVKENEGERDELEEKLGQTECKYYLRSGGCKFGKACKFNHTRGKYSSSTAPASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGVCDSPSGYGNGSSIPLQGVSQSSIPSWSSTRTLNETAPFMPMILSPTLGVSPQSSEWNGYQAPVYLSERSIHSPSSYVMNNPAIERNVYMHHKKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPPPSTKPGLDQQSSYTNSAIVEVAGMGGSGGASDVTIQQPV. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02909 498 PANTHER PROTEIN PHOSPHATASE RELATED 46 463 - -
Seca4g02909 498 ProSiteProfiles Zinc finger C3H1-type profile. 150 178 IPR000571 GO:0046872
Seca4g02909 498 ProSiteProfiles Zinc finger C3H1-type profile. 429 457 IPR000571 GO:0046872
Seca4g02909 498 MobiDBLite consensus disorder prediction 1 143 - -
Seca4g02909 498 SUPERFAMILY CCCH zinc finger 151 178 IPR036855 GO:0046872
Seca4g02909 498 SUPERFAMILY CCCH zinc finger 248 274 IPR036855 GO:0046872
Seca4g02909 498 Gene3D - 124 188 - -
Seca4g02909 498 MobiDBLite consensus disorder prediction 105 119 - -
Seca4g02909 498 MobiDBLite consensus disorder prediction 122 143 - -
Seca4g02909 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 455 IPR000571 GO:0046872
Seca4g02909 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 224 IPR000571 GO:0046872
Seca4g02909 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 176 IPR000571 GO:0046872
Seca4g02909 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 273 IPR000571 GO:0046872
Seca4g02909 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 410 IPR000571 GO:0046872
Seca4g02909 498 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Seca4g02909 498 SUPERFAMILY CCCH zinc finger 202 229 IPR036855 GO:0046872
Seca4g02909 498 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g02909 498 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Seca4g02909 498 SMART c3hfinal6 150 177 IPR000571 GO:0046872
Seca4g02909 498 SMART c3hfinal6 383 410 IPR000571 GO:0046872
Seca4g02909 498 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Seca4g02909 498 SMART c3hfinal6 429 456 IPR000571 GO:0046872
Seca4g02909 498 Coils Coil 179 206 - -
Seca4g02909 498 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Seca4g02909 498 MobiDBLite consensus disorder prediction 51 65 - -
Seca4g02909 498 SUPERFAMILY CCCH zinc finger 427 455 IPR036855 GO:0046872
Seca4g02909 498 Gene3D - 194 283 - -
Seca4g02909 498 Gene3D - 366 422 - -
Seca4g02909 498 Gene3D - 429 476 - -
Seca4g02909 498 ProSiteProfiles Zinc finger C3H1-type profile. 383 411 IPR000571 GO:0046872
Seca4g02909 498 SUPERFAMILY CCCH zinc finger 388 412 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02909 Seca-Chr4 50095943 50102054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02909 379 481 C2H2 Transcription Factor Family AT3G02830 44.660 8.88e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g02909 zf-CCCH 1.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02909 - - gmx:100786894 669.848