Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02903 ATGGAGATGGATCACAAGCAACAAGTTTGTGTGGCTTGCATTCAGAACTGTCTATTGTTCCACCCATCAGCGAAAACCTCAAATACCTCTTTCTTCAAGGTCATCACTCATCAAAACGATTTCATGATTTTGTATATTCCTCCTAAGTTTAGTCGTACTGTGTCAGTCATGGTTGATAAGGAAATCATTCTCAAGGATTCAAGTGGGCAGCGATGGCCTGTAAAAGTATCACGTGATGATGGTTCTTTTGTTTTTAGGGAAGGATGGAATTCTTTTGCATTGGATCATGGACTTGAAATTGGAGAACTTCTGATATTTAATTGCATTAACAGATTGCAGTTTGATGTCAAGATCTATGGTATATCTTCGTGTGAAAGGCTTGATTTTTCTAAAAAAATAAATCAGAAAAAAAGTAGAGGCAGAAGTGGCTCTCCCAATAGAGATGGTGTGTTGGTCAGACAAGGTCCAAATGCCTCACTTGTCTCCGAGCCTGGTGTGCAAAAAATGAATACCCAGCACAGGGAGGTTGATTTAGGAGGAACACTGAATAGTGTGGAGAATATTTCAAAAAATGATGATAACAATGGAAGTGCCCAAGCTATGTACATGTCAGAACACTGTGAAGATCTATGTTACATGGCAAGCCTAGAATTTGAAGACGAAGAAAGAGATAACAACACCTGCGGTCTTGATGGGACTATGAAAATTACAGCTGGAGATTCAAAAGTTTCGCATGTTAATCATGGATCCCATATATATCAGACTAATGCAACCTTATGTAACAAAGATTCCATGTTTAAAGGGATATTGGGCACAGGAGCTGCCTCAGATGCATCTGATCTTGAAATGTCTGGAAGAAATAATTCTCTTAGTGAGTCAGACAAGAGCGTGTATGACAAGACTTCTACTTTGAAAATTGAAGAAAACAGAGAGAACAAATCCATTATGTCTGACCAGGAAGTTCAAGTGTGCCAATTTACTGAGGGATTAGGTACTACAGTTAATAGAGCAACTTTGTTTCATTTCCAGAGACTTGAATTTGTTAATTGA 1050 0.3838 MEMDHKQQVCVACIQNCLLFHPSAKTSNTSFFKVITHQNDFMILYIPPKFSRTVSVMVDKEIILKDSSGQRWPVKVSRDDGSFVFREGWNSFALDHGLEIGELLIFNCINRLQFDVKIYGISSCERLDFSKKINQKKSRGRSGSPNRDGVLVRQGPNASLVSEPGVQKMNTQHREVDLGGTLNSVENISKNDDNNGSAQAMYMSEHCEDLCYMASLEFEDEERDNNTCGLDGTMKITAGDSKVSHVNHGSHIYQTNATLCNKDSMFKGILGTGAASDASDLEMSGRNNSLSESDKSVYDKTSTLKIEENRENKSIMSDQEVQVCQFTEGLGTTVNRATLFHFQRLEFVN. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02903 349 SUPERFAMILY DNA-binding pseudobarrel domain 25 124 IPR015300 -
Seca4g02903 349 Gene3D - 23 124 IPR015300 -
Seca4g02903 349 Pfam B3 DNA binding domain 31 116 IPR003340 GO:0003677
Seca4g02903 349 CDD B3_DNA 30 119 IPR003340 GO:0003677
Seca4g02903 349 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Seca4g02903 349 SMART B3_2 31 122 IPR003340 GO:0003677
Seca4g02903 349 PANTHER B3 DOMAIN-CONTAINING 25 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02903 Seca-Chr4 49984849 49987310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02903 26 126 B3 DNA Binding Superfamily AT5G66980 31.429 2.02e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g02903 B3 9.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02903 - - ccaj:109789322 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02903 4 49984849 49987310 Seca4g02903 4 49984849 49987310 ECH