Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02899 ATGGCGGCTGCAGCGGTGAAGGCACCACGGCCGGGCAAGGGAGGGTTCGAGGGCCATGGTCTGAGCGAAGAGGAAGCACGAGTGCGAGCCATTGCGGAGATCGTGAACTCCATGGTCGACCTCTCTCGGAAAGGGCAGAATGTCGATCTTAACGCGCTCAAGTCCGCGGCGTGCCGCAAATACGGCTTGGCTCGTGCGCCGAAGCTGGTGGAGATGATCGCCGCTCTCCCCGACTCCGAACGAGAGGCCCTCCTTCCCAAGCTCCGAGCCAAGCCCGTCCGAACCGCCTCCGGAATAGCGGTGGTGGCCGTCATGTCGAAGCCCCACCGATGCCCTCACATCGCAACCACCGGCAACATATGCGTCTACTGCCCCGGTGGTCCTGACTCTGACTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACTAGTATGCGTGCAATTCGAGCAAGGTATAACCCGTATGTCCAGGCAAGGAGTAGGATTGATCAGCTTAAGCGTTTGGGGCACAGTGTAGACAAGGTTGAGTTCATCTTAATGGGTGGCACTTTCATGTCCCTTCCGGCGGATTACCGTGATTACTTCATAAGGAATCTTCATGATGCTTTGTCTGGACACACGTCTGCCAATGTAGAAGAGGCAGTGGCGTACTCTGAGCATAGTGCTACCAAGTGTATTGGCATGACAATAGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGACAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTAGCTGCTGTAGCTGATTGTTTTTGTTTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCAGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCTGAACAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAACGGGATATTCCCATGCCTCTAGTTACCTCGGGGGTTGAGAAAGGGAATCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTAGGATTAAAATGCCGTGATGTTCGGACCAGAGAAGCTGGTATCCAGGATATTCATCACCAAATTAAGCCTGAAGAGGTGGAACTTGTTCGTCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTGTCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGATTGCGAAAATGTGGCCGGAACACTACTTGTCCAGAGCTTATGGGAAAGTGTTCTATTGTTCGTGAACTCCACGTTTATGGAACTGCTGTACCAGTTCATGGGCGTGATGCTGACAAGCTACAACACCAGGGTTATGGTACACTTCTCATGGAGGAGGCAGAGCGTATTGCTTGCAGAGAACACAGATCAACCAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGAAAACTGGGATATGAACTTGAAGGGCCTTACATGGTCAAATATCTAATTCCCATCATGCTGAAATCAACCTTCACTCCCATTTTCTGGGTGCTTGCCCCCAAACCCAAATCTCCAAAACTATTATCCTACGTAATCACCAACACCTTATCAAACAGCATATCACTTGTTCGACAGAACTCCTCTTTCAAACACGACCCCATCGTCACACCACCACTCCCTTCTTCAGCTTATGTTCACCTCCCTTTCTGTCGAAAACGTTGCCACTACTGTGACTTCCCCATCGTCGCTCTTGGCTCCGCTTCAACCCAAATAGACGACGACCCACGAGTCTTAAACTACATACAATGGCTCTGCAGAGAAATCAATGCAACCAAAGTGGAAGAAGAACTTGATTCCAAGACACCCCTTCAAACGGTCTATTTTGGGGGTGGAACACCTTCCCTCGTCCCTCCAAGCATGGTTTCCTCGGTTTTGGAGACTCTGAGGATGAAATTTGGGTTGACTGAGAATGCTGAAATTTCAATGGAAATGGATCCAGGTACATTTGATGGGAAGAAGATGCAAGAGATGATGATGTTGGGAATAAACAGAGTGTCTCTGGGAGTTCAAGCATTTCAGGAGAAGCTGTTGAGGACTTGTGGGAGGGCACATGGCCTGAAAGAGGTTTATGAGGCTATTGATATTGTCAAGTCATGTGGGGTTGATAATTGGAGTATAGATCTTATAGCTTCACTACCTCATCAGACTAGTGATATGTGGGAGGAAAGTCTAAGGCTCACCATTGAGGCACAACCAACTCATGTTTCTGTTTATGATTTGCAAATTGAGCAAGGCACAAAATTTGGAAGGCTGTATTCACCAGGGGAATTCCCATTGCCCTCTGAGATACAATCAGCTGATTTCTATAAGATGGCTTCAAGAACGCTTTGTGATGCGAATTATAACCATTACGAAATCAGCAGCTACTGTAAGAGTGGATATGAATGCAAACACAACAATATCTATTGGAAGAACAAGCCTTTCTATGGCTTTGGCCTCGGCTCTGCTAGTTTTGTTGGTGGGTTGAGATTTTCAAGACCGAAGAAGGTGAATGATTACATAAATTTTGTGCACAATCTGGAAAATGGATTAGTAAATAGCTCAGCTGATGATCACATTCATGGCAAGGACACAGCCATGGATGTTGTGATGCTATCCCTAAGAACTGCTAGAGGCCTAGACTTGAAGTGTTTCCAAGAATCATTTGGCAGCTCTATTGTTCTGTCTCTTCTTGAGGCTTATAAACCTTATGTTAAGAGTGGACATGTGGTTTGCTTGGACGAGCAGAGGAGAACCATTAGAATAGATGACCTCAACATTTCTCCTTTGGATGAAACCAAGACAGAAAGGAGGCTGGCCTATATAAGGCTAAGTGATCCAGAAGGTTTCCTCTTATCAAATGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGTAAGGACTGCTCTCCATACTAA 3129 0.464 MAAAAVKAPRPGKGGFEGHGLSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPDSEREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLIPIMLKSTFTPIFWVLAPKPKSPKLLSYVITNTLSNSISLVRQNSSFKHDPIVTPPLPSSAYVHLPFCRKRCHYCDFPIVALGSASTQIDDDPRVLNYIQWLCREINATKVEEELDSKTPLQTVYFGGGTPSLVPPSMVSSVLETLRMKFGLTENAEISMEMDPGTFDGKKMQEMMMLGINRVSLGVQAFQEKLLRTCGRAHGLKEVYEAIDIVKSCGVDNWSIDLIASLPHQTSDMWEESLRLTIEAQPTHVSVYDLQIEQGTKFGRLYSPGEFPLPSEIQSADFYKMASRTLCDANYNHYEISSYCKSGYECKHNNIYWKNKPFYGFGLGSASFVGGLRFSRPKKVNDYINFVHNLENGLVNSSADDHIHGKDTAMDVVMLSLRTARGLDLKCFQESFGSSIVLSLLEAYKPYVKSGHVVCLDEQRRTIRIDDLNISPLDETKTERRLAYIRLSDPEGFLLSNELIALAFGVIDSCKDCSPY. 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02899 1042 FunFam Elongator complex protein 3 407 559 - -
Seca4g02899 1042 Pfam Radical SAM superfamily 119 307 IPR007197 GO:0003824|GO:0051536
Seca4g02899 1042 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g02899 1042 Pfam Acetyltransferase (GNAT) family 411 547 IPR000182 GO:0016747
Seca4g02899 1042 NCBIfam radical SAM family heme chaperone HemW 618 975 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Seca4g02899 1042 ProSiteProfiles Radical SAM core domain profile. 94 384 IPR007197 GO:0003824|GO:0051536
Seca4g02899 1042 SUPERFAMILY Radical SAM enzymes 612 984 - -
Seca4g02899 1042 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 408 568 IPR000182 GO:0016747
Seca4g02899 1042 SFLD HemN-like, clustered with heat shock genes 617 985 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Seca4g02899 1042 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 422 560 IPR016181 -
Seca4g02899 1042 SFLD ELP3-like 49 558 IPR034687 -
Seca4g02899 1042 Gene3D tm_1862 like domain 624 834 IPR023404 -
Seca4g02899 1042 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 46 558 IPR034687 -
Seca4g02899 1042 SFLD anaerobic coproporphyrinogen-III oxidase like 617 985 - -
Seca4g02899 1042 SFLD Radical SAM 49 558 IPR007197 GO:0003824|GO:0051536
Seca4g02899 1042 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 18 558 IPR039661 -
Seca4g02899 1042 Pfam Radical_SAM C-terminal domain 325 404 IPR032432 -
Seca4g02899 1042 ProSiteProfiles Radical SAM core domain profile. 611 856 IPR007197 GO:0003824|GO:0051536
Seca4g02899 1042 Gene3D - 410 559 - -
Seca4g02899 1042 SUPERFAMILY Radical SAM enzymes 131 370 - -
Seca4g02899 1042 SMART MiaB 101 363 IPR006638 GO:0003824|GO:0051536
Seca4g02899 1042 SMART MiaB 616 847 IPR006638 GO:0003824|GO:0051536
Seca4g02899 1042 CDD Radical_SAM 108 355 - -
Seca4g02899 1042 Pfam Radical SAM superfamily 621 802 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02899 Seca-Chr4 49944181 49956949 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca4g02899 Radical_SAM 6e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02899 K07739 - gmx:100818764 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02899 4 49944181 49956949 Seca4g02899 4 49944181 49956949 ECH