Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02872 ATGTTTCATGAATGGTGTGATGGTTATGGTGGCAGTGCAGGTTATGTAGGAGATGATAAGGCAACTGCTGAAACATTGGATTCAGAGGGGTGGCTGAAGACTGGTGATCTTTGTTATTTTGACTCTGATGGTTTCTTATTCATTGTAGATAGGCTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTGGAACACATACTTCACACCAATCCTGAGATTGCTGATGCTGCAGTAGTTCCGTATCCTGATGAAGATGCAGGGCAGATTCCAATGGCCTTTGTGGTAAGAAAGCCTGGAAGCAACATCACTGCAGCTCAGATCATGGAGTTTGTGGCAAAGCAGGTTGCACCATACAAGAAGATACGACGTGTTTCTTTTGTTAACTCTATCCCAAAATCTCCGGCTGGCAAAATTTTGAGAAGAGAATTAGTTGATTATGCTCTGTCTAGTGGTTCATCTAAATTGTGA 483 0.4224 MFHEWCDGYGGSAGYVGDDKATAETLDSEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITAAQIMEFVAKQVAPYKKIRRVSFVNSIPKSPAGKILRRELVDYALSSGSSKL. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02872 160 Gene3D - 54 154 IPR045851 -
Seca4g02872 160 Gene3D - 5 53 IPR042099 -
Seca4g02872 160 FunFam 4-coumarate--CoA ligase 2 54 155 - -
Seca4g02872 160 Pfam AMP-binding enzyme 6 58 IPR000873 -
Seca4g02872 160 SUPERFAMILY Acetyl-CoA synthetase-like 5 153 - -
Seca4g02872 160 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 150 - -
Seca4g02872 160 Pfam AMP-binding enzyme C-terminal domain 67 142 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02872 Seca-Chr4 49631151 49632605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02872 5 160 Monolignol Biosynthesis Gene Families AT5G63380 72.436 6.99e-82 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02872 K01904 - gmx:100777435 285.419