Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02871 ATGGCCAAGACATACTCACAACCTAACAACACCATCGACCCAAACAGCGGTTTCTGTTCCCAATCCAGAACCTTCCATAGTCTCCGTCCAAACGTCCCTCTCCCTCCACCATCTCACCCTCTCTCCTTTGCCGATTACATCCTTTCTCTCCTCCCCGCCACCGCCACCTCCTCCTCCACCGCCGCCCTCATAGACTCCGCCACTGACCGCCACCTCTCTTACTCCCTTCTCCTCCGCCAAATCAAATCCCTCACTTACTCCCTCCAATCCCTCACCCCTCTCTCCAATGGCCACGTGGCATTCATTCTCGCCCCTACTTCCCTACACGTCCCCGTACTCTATCTATCCCTCCTCTCCCTCGGTGTCACCATCTCACCCGCTAACCCACTCAGTTCTCCCTCCGAGTTGACTCACCAGGTTCGACTCACCAAACCCGTCATCGCATTCGCCACATCCTCCACCGCTGCCAACATTCCCAACCTCCCACTCGGCACCATCCTCCTCGATTCCCCCTCCTTCCTTTCCATGCTCGATGCCGAGGTTCACTCAGAGCCTCGCCGAGTTCAAACGAGTCAATCTGACTCAGCGGCGATTCTCTTCTCTTCAGGCACAACAGGGCGAGTCAAGGGCGTGTTGCTCACCCACGGGAACCTAATCGCGTTGATTGGGGGGTTTTATCACCTGAGGCACATGATGGAGCAGGAGGAAGAAGAACCGAACCCGGTGTCACTGTTCACTCTGCCACTTTTCCATGTGTTTGGGTTCTTCATGCTGGTTAGGGCCATAGCCATGGAGGAGACGTCGGTGCTGATGCAGAGGTTCGATCTTGAAGGGATGCTGAAGGCCGTGGAGAAGTACAGGATCACCTACATGCCGGTGTCGCCGCCGCTGGTGGTGGCGCTAGCTAAATCGGAGCTGGTGAAGAAATACGATCTTAGCTCGCTCCGGTTGCTGGGATGCGGTGGCGCGCCGCTCGGTAAGGACGTGGCAGAGAGCTTCAAAGCCAAATTCCCCAACGTGGAAATTGTGCAGGGCTATGGTCTGACTGAGAGTGGTGGAGGGGCAGCAAGAATGATAGGGCCCGATGAAGCTACGCGCCATGGTTCAGTGGGTCGACTAGCAGAAAATATGGAAGCCAAGATAGTGGACCCTGTAACTGGTGAGGCATTACCTCCTTGCCAGAAAGGGGAGCTGTGGTTGCGAGGTCCAACAATCATGAAAGGTGATTAG 1230 0.5585 MAKTYSQPNNTIDPNSGFCSQSRTFHSLRPNVPLPPPSHPLSFADYILSLLPATATSSSTAALIDSATDRHLSYSLLLRQIKSLTYSLQSLTPLSNGHVAFILAPTSLHVPVLYLSLLSLGVTISPANPLSSPSELTHQVRLTKPVIAFATSSTAANIPNLPLGTILLDSPSFLSMLDAEVHSEPRRVQTSQSDSAAILFSSGTTGRVKGVLLTHGNLIALIGGFYHLRHMMEQEEEEPNPVSLFTLPLFHVFGFFMLVRAIAMEETSVLMQRFDLEGMLKAVEKYRITYMPVSPPLVVALAKSELVKKYDLSSLRLLGCGGAPLGKDVAESFKAKFPNVEIVQGYGLTESGGGAARMIGPDEATRHGSVGRLAENMEAKIVDPVTGEALPPCQKGELWLRGPTIMKGD. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02871 409 Gene3D - 30 408 IPR042099 -
Seca4g02871 409 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 408 - -
Seca4g02871 409 SUPERFAMILY Acetyl-CoA synthetase-like 53 408 - -
Seca4g02871 409 Pfam AMP-binding enzyme 58 408 IPR000873 -
Seca4g02871 409 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02871 Seca-Chr4 49628992 49630908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02871 4 408 Monolignol Biosynthesis Gene Families AT5G63380 58.753 2.36e-160 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02871 K01904 - gmx:100777435 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02871 4 49628992 49630908 Seca4g02871 4 49628992 49630908 ECH