Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02865 ATGGCTGCTTTTACTTCTTTCTCCCTCTCTCCTTACACTCCCTATCTCCGCCCAAAACCAACCAGGCTTTCCGTTTCAGTTTCCGCGCTCCCAGGCACTGATGGAGCTAATTCTAAAGCACCGCGCAGAAGAACGAGAAGAATAGAAGGTCCTCGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCCGATGGACCACCCTTACGCGTTCTCCCTATTGGTGGTTTGGGTGAAATTGGAATGAATTGCATGCTTGTAGGAAACTATGACCGCTATATCCTCATTGATGCCGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTACAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACATGGTCATGAGGATCATATCGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACTAGGAAGAAGTTTCTGGCTGGGCCATTTGAGATAGAACCTATCACGGTGACCCATTCCATTCCTGATTGTTGCGGACTAGTTCTTCGCTGCTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTGGATGGGAAGGTTTTTGATCGTGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACACTGATGATGAGTGATTCAACAAATGTACTCTCTCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCACTATTGAGGCACATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATAGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCATTTGATCCATCCACACTGGTGAAAGCAGAGGATATTGATTCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCTTTGAATCTTGCATCTTATGGAAGTAGTCACGCTTTCAAACTAACCAAGGATGATATTGTTTTGTATTCAGCTAAGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTCCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCCGTTATTAAGAATGGAGAAATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGATTAGTATGGAAATCTTTCGCCCTACAAATTTAGACAGTTTGGCTGAAAACACCATAAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGATGGATGCACTATATAAAGCCGCCCATGCCACTCTTTTAAGCTGTCCTGTTAACAGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTGTAGAAAACCCTGCAGCTGGTCTTGGTAATGAGATAAACACAAAATTGTCCGGAAAATCCGATGTGGCTCCTGTAATATCAACATTAAGAAAAGCAGTGGATGGACATGGAAAGGAAAATCAGTCCACCACACTGCACAGTAGAGATGATGGAATTAATATTCAAGGATTACCTGAGGAAGACACCACTTTAAGTGGAGCTGAGGGTGATTTATCTGATTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCATCATCTGTTGAGAAGTCAATCAAAGCTAATAATGGTCATGTTTCACAAAAGGAGCATAAGTCCAATCTAAAGAAAGATGATTCTGAAGACACCAGTGAAGCCAAGTCTGGAGAAATGCCTGATTCCAATCATCCGTCTTCAAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTAGTATGCGGGGGGAACTACATGACAGATTTCAAGTTGTTAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAAAACTTGTTGGCTGATGGGATTAACAGAAGTCCTGGACAGTGCAAATCTCTTTGGACATCTTTGGTACTGAAATATGAGGAGATCAAGAATGAGATGGGAAGCAAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGGATAATGCCCAATGAGGAAACACCGGCAATCATGAAGCTTGATACCAGCGGTCTCGAATCGTTTCCTACACTGATTGCACCTAGAAACGACGTCGTTGGAGACTTCTCCGCGCCCCCATCGTTCGAGCTTCCGAATTCCAATGATTTCGATGGCTTCCTTAAAGAAGCTATTCAGATGGTGAAGCCGGCGAAGGGTACCACGACTCTTGCTTTTATATTTAAGGAAGGTGTCATGGTAGCTGCTGATTCTAGAGCTAGCATGGGAGGATATATATCATCACAGTCTGTTAAGAAAATTATTGAAATCAATCCCTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGCCAATTTTGGCACAGAAATCTTGGGATCAAGTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGAGCCTCTAAGCTACTTGCAAATATTTTATACTCTTATCGTGGAATGGGGTTATCTGTCGGTACCATGATTGCTGGATGGGATGAGACGGGTCCTGGTCTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACAAGATTTTCAGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGACAACGGGTACCGATACGACATGTCAGTTGAGGAAGCTGCAGAACTGGCCCGACGAGCAATTTATCATGCAACATTTCGTGATGGAGCTAGTGGTGGAGTTGCAAGCGTTTACTATGTTGGACCAAACGGATGGAAGAAATTGTCTGGTGATGATGTTGGGGAACTTCATTACCATTACTACCCAGTTACCCCAAGCACCGTGGAACAAGAAATGGTTGAGGCAGCTGGACCTTGA 3279 0.4236 MAAFTSFSLSPYTPYLRPKPTRLSVSVSALPGTDGANSKAPRRRTRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFLAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKAEDIDSYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKDDIVLYSAKEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLKIALDGIIVISMEIFRPTNLDSLAENTIKGKIRITTRCLWLDKGKLMDALYKAAHATLLSCPVNSPLAHMERTVSEVLRKMVRKYSGKRPEVIAIAVENPAAGLGNEINTKLSGKSDVAPVISTLRKAVDGHGKENQSTTLHSRDDGINIQGLPEEDTTLSGAEGDLSDSEDSDEFWKPFIASSVEKSIKANNGHVSQKEHKSNLKKDDSEDTSEAKSGEMPDSNHPSSKSVKKNKWKAEEVKKLISMRGELHDRFQVVKGRMALWEEISQNLLADGINRSPGQCKSLWTSLVLKYEEIKNEMGSKKSWQYLEDMERIMPNEETPAIMKLDTSGLESFPTLIAPRNDVVGDFSAPPSFELPNSNDFDGFLKEAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDNGYRYDMSVEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMVEAAGP. 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02865 1092 PANTHER RIBONUCLEASE J 1 401 - -
Seca4g02865 1092 MobiDBLite consensus disorder prediction 684 729 - -
Seca4g02865 1092 Gene3D - 730 791 - -
Seca4g02865 1092 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 876 1085 IPR029055 -
Seca4g02865 1092 MobiDBLite consensus disorder prediction 686 712 - -
Seca4g02865 1092 Pfam Myb/SANT-like DNA-binding domain 728 811 IPR044822 -
Seca4g02865 1092 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 863 1074 IPR029055 -
Seca4g02865 1092 PRINTS Proteasome component signature 1040 1051 IPR000243 GO:0004298|GO:0005839|GO:0051603
Seca4g02865 1092 PRINTS Proteasome component signature 1004 1015 IPR000243 GO:0004298|GO:0005839|GO:0051603
Seca4g02865 1092 PRINTS Proteasome component signature 883 898 IPR000243 GO:0004298|GO:0005839|GO:0051603
Seca4g02865 1092 PRINTS Proteasome component signature 1015 1026 IPR000243 GO:0004298|GO:0005839|GO:0051603
Seca4g02865 1092 MobiDBLite consensus disorder prediction 621 666 - -
Seca4g02865 1092 FunFam Proteasome subunit beta 876 1085 - -
Seca4g02865 1092 ProSiteProfiles Proteasome beta-type subunit profile. 875 1054 IPR023333 -
Seca4g02865 1092 Gene3D - 384 463 IPR036866 -
Seca4g02865 1092 CDD GT1 728 793 - -
Seca4g02865 1092 Pfam Proteasome subunit 874 1054 IPR001353 GO:0005839|GO:0051603
Seca4g02865 1092 MobiDBLite consensus disorder prediction 39 59 - -
Seca4g02865 1092 CDD RNaseJ_MBL-fold 78 447 - -
Seca4g02865 1092 Gene3D - 60 291 IPR036866 -
Seca4g02865 1092 SMART Lactamase_B_5a 87 284 IPR001279 -
Seca4g02865 1092 Pfam Beta-lactamase superfamily domain 98 234 IPR001279 -
Seca4g02865 1092 MobiDBLite consensus disorder prediction 26 59 - -
Seca4g02865 1092 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 447 IPR036866 -
Seca4g02865 1092 ProSitePatterns Proteasome beta-type subunits signature. 879 926 IPR016050 GO:0005839|GO:0051603
Seca4g02865 1092 ProSiteProfiles Myb-like domain profile. 722 786 IPR001005 -
Seca4g02865 1092 CDD proteasome_beta_type_5 876 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02865 Seca-Chr4 49440341 49460684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02865 713 811 Trihelix Transcription Factor Family AT2G38250 31.683 1.84e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g02865 Proteasome 6.9e-48 CL0052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02865 - - gmx:100783850 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02865 4 49440341 49460684 Seca4g02865 4 49440341 49460684 ECH
Seca12g01727 12 18993698 19010449 Seca4g02865 4 49440341 49460684 PCT