Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02863 ATGGTTTCAACGAGACGCAACAGTGGATCTCTCTCCGCCGCAAACAACGCCAAGAGACCTTCCTCTTCTGAAGACAAACCTCCTTCCTCTTCCCCTAAGCGCCAAAAGGCTGACAATGGTGCTGCGTCCTCGGAGAAACCTATGCCGCCTGCGGAGAATTCCAAGGAATTGTCTACTCCGGAGCCCCCCGCCGATCCCGGAGAATGCGGCCCCGCCGATGCTCAGATCGACGGCGCCGCCGCTACCGATGGAAAGACCGATGCTACGCCGCCGATCGCTGACGGTTCTTCGCCAACTCTGGTGGCTGATAAACCTAGGGCTTCGTTTTCTTCGTGGAGCATATATCAGAAGCAAAACCCAAACTTTGAGGCTTCAGCTCCATGGTGCAGGCTCCTGTCCCAGTCTGCACAGAATCCAAATGTTGCCATCTGCACACCCAACTTTACTATTGGCTCAAGCAGAAATTGCAACTTTCCATTGAAGGATCATAATATAAGTGGAAATTTATGCAAGATCAAGCATACCCAGTGTATGTGCAGTATGGTTACTGTTGTTTCTGGAAATGATCAGCGTGAGGGAAGTGCTGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGTTAGTAAATGGGACCCTTGTCAAGAAGAACACCAGCTGCGTGCTTAACTCGGGTGACGAGGTGGTTTTTGGTTTGCTGGGAAATCACTCTTATATTTTTCAGCAAGTAAATACTGAGGTTGCAGTTAAGGGTGCTGAAGTTCAGACTGGTGTTGGTAAATTGCTGCAGCTTGAAAGGAGAGCTGGAGACCCTTCAGCTGTCGCTGGGGCTTCTATTTTGGCCTCTCTATCCAGCCTCAGACAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAACCTCACCCGGGTACTGATGTTTCAAAAACTGAGCTTGATGGCCTGGAAGGAAACTCGGCTCCAAATGTAGGGACTGATAAAGCTGCTGATGTCGGAGCAAGCGACAAGAATTCTCCTATGGATTGCGATCCAGATGATGCGGGCACAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTGAGGATTCTAGCTGGATCTAGTTGTAAACTGAAATTGAGCAAAAGTATATGTAAACAGGTATTGGAAGAAAGAAATGGGACGAGGGATACGCAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTGCAGTTTTTAAAGAAGATGTTCATGCTGCAATACTGGATGGAAAAGATATAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAGTGTTCTGGTTGCAGCTTGCTTCATACACCTGAAGCATAAAGAACATGTGAAGTACACCACAGATCTTACAACCATAAACCCTCGTATTTTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAATTGCTCATCTTTGATAGTCATTTACTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAACTGCTCAAAGAAGGATTTAATGCTGAGAAATCCTGCAGCTGTGCCAAGCAAAGTCCTACAGCCACAGACATGGCTAGGAGTGTGGATCCATCAATTAGTGAACCTGATACACCTAGCTCTTCAAATGCACCTACTTCTTTTGGCCTTGATTCTCAACCTAAGTTGGAAACTGATAGTGTACCGTCTACCTCTGGGGCAGCTAAAAATTGCTTGTTTAAACTAGGTGATAGGGTAAAATATAGCTATTCATCTTCTGGTGGCTTGTATCAGACATCTTCTTCAAGGTACAAGTTTACAATTTTTCTGAGCAATTGCATGTACAGGGGTCCACCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCATTGTCAAAAATTGGTGTTAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTGTCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGCATTGAAGAACTGGACAAAATTCTTATTAATACATTGTTTGAGGTTGTGTTTAGTGAGAGCAGAAATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAATCTATAGTAGGAAATGGAGATGCATTTTCATTTAAAGCTAAGCTTGAACAGCTTCCAGACAATGTGGTGGTAATAGGTTCACACACACAAACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAATTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTTCCAGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGTCCCAAAGCCTAACAAAACTTTGACTAAGCTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCTTCTTGGAAGCAGCAACTTGACCGAGATGTTGAGACTCTAAAAATCAAAGGAAATTTGCACCATTTGCGTACGGTTTTGAGCCGTTGTGGGATGGAATGTGAAGGACTTGAGACCTTGTGTATTAAGGACCAGACACTTACAAATGAAAATGTAGAGAAAATAGTTGGTTGGGCTTTAAGCCACCATCTCATGCAGAATTCTGAAGTTGATCCTGATGCTAAGCTTGTCTTGTCTTGTGAGAGCATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAGAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACGGAAAACGAGTTTGAAAAGAGACTCTTGGCTGATGTTATTCCACCTAGCGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTGCAGAGGCCTGAGCTTTTCTGCAAGGGGCAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAGTTGCCACTGAAGCCGGTGCGAATTTCATTAACATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTGAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCTAGTGTGATATTTGTTGATGAGGTGGATAGCATGTTGGGCCGGAGGGAAAATCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAGTTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATACGGAGGCTTCCTCGAAGATTAATGGTAAATTTGCCAGATGCTCCAAATAGAGAAAAAATATTGAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATATTGATCTGGGTGCAATTGCAAATATGACTGATGGATATTCAGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGACCGATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACATGCTGCTGCGCTAGTGGAAGGAAGGCCTGCTCCAGCCTTGAGAGGAAGTGCAGATATCCGATCTTTAAACATGGAAGACTTCAAATGTGCTCATCAACAGGTATGTGCTAGTGTTTCCTCTGAATCAGTAAATATGACTGAGCTTGTGCAATGGAATGAACTATATGGTGAAGGTGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3768 0.4374 MVSTRRNSGSLSAANNAKRPSSSEDKPPSSSPKRQKADNGAASSEKPMPPAENSKELSTPEPPADPGECGPADAQIDGAAATDGKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNFEASAPWCRLLSQSAQNPNVAICTPNFTIGSSRNCNFPLKDHNISGNLCKIKHTQCMCSMVTVVSGNDQREGSAVAVLESTGSKGSVLVNGTLVKKNTSCVLNSGDEVVFGLLGNHSYIFQQVNTEVAVKGAEVQTGVGKLLQLERRAGDPSAVAGASILASLSSLRQDLTRWKSPSQTASKPHPGTDVSKTELDGLEGNSAPNVGTDKAADVGASDKNSPMDCDPDDAGTEAGNVKLSGVNDFLRPFLRILAGSSCKLKLSKSICKQVLEERNGTRDTQAASTSGTSVRCAVFKEDVHAAILDGKDIEVSFDNFPYYLSENTKSVLVAACFIHLKHKEHVKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKEGFNAEKSCSCAKQSPTATDMARSVDPSISEPDTPSSSNAPTSFGLDSQPKLETDSVPSTSGAAKNCLFKLGDRVKYSYSSSGGLYQTSSSRYKFTIFLSNCMYRGPPNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGVCEGGQGFFCNVTDLRLENSGIEELDKILINTLFEVVFSESRNAPFILFMKDAEKSIVGNGDAFSFKAKLEQLPDNVVVIGSHTQTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRCGMECEGLETLCIKDQTLTNENVEKIVGWALSHHLMQNSEVDPDAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILKVILAKEDLSSDIDLGAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEHAAALVEGRPAPALRGSADIRSLNMEDFKCAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM. 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02863 1255 MobiDBLite consensus disorder prediction 1 101 - -
Seca4g02863 1255 CDD RecA-like_ATAD1 954 1120 - -
Seca4g02863 1255 MobiDBLite consensus disorder prediction 292 307 - -
Seca4g02863 1255 SUPERFAMILY SMAD/FHA domain 127 235 IPR008984 GO:0005515
Seca4g02863 1255 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 949 1125 - -
Seca4g02863 1255 Pfam ATPase family associated with various cellular activities (AAA) 991 1120 IPR003959 GO:0005524|GO:0016887
Seca4g02863 1255 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 415 1254 - -
Seca4g02863 1255 Coils Coil 911 931 - -
Seca4g02863 1255 Gene3D - 949 1230 IPR027417 -
Seca4g02863 1255 MobiDBLite consensus disorder prediction 292 352 - -
Seca4g02863 1255 Gene3D - 127 250 - -
Seca4g02863 1255 Pfam FHA domain 149 232 IPR000253 GO:0005515
Seca4g02863 1255 Gene3D - 1123 1217 - -
Seca4g02863 1255 MobiDBLite consensus disorder prediction 541 584 - -
Seca4g02863 1255 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g02863 1255 SMART AAA_5 987 1124 IPR003593 GO:0016887
Seca4g02863 1255 CDD FHA 130 242 - -
Seca4g02863 1255 ProSitePatterns AAA-protein family signature. 1094 1113 IPR003960 GO:0005524|GO:0016887
Seca4g02863 1255 Pfam AAA+ lid domain 1144 1182 IPR041569 -
Seca4g02863 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 950 1229 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02863 Seca-Chr4 49417105 49434518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02863 950 1182 Calmodulin-binding Proteins AT3G56690 42.616 1.96e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02863 - - gmx:100780098 2088.15