Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02859 ATGGCTCCCCTGGCAACAGATGCTCTGAATATATGGCAGCATGTGGTGAAAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCATAGAAGACGGAGATCAACAGCAAAAGGCATTTGATGATGCAGATTATTCATCCTCAGCGATTGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTAAGGATGAGGATGAGGATGGAGAGGATAGGGAGGATATTACCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATATCTTATCTAGAATTGCAATATTTGGGATAACCCCATCTAGACTTTCCAGATTGTACTCAAATAGCCAAATCAGTTTTCCAAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGCAGAGCAACTTTAATAACTCATTCATCAGCTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTGCAAACTCTTCCAGTTGCTGGCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTCGGCAGATCAATTGCAAAAGCAGGTATTCCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCAATTTTGAGAACTCAAAATTAAGAGCAATAGCTTGCAATTGGTGGAATCAAGTGAGCATGTGTCTGTCAGGGTATGAAATTAATCAAGGAAATCAAGGTGGCAACACCTTGGAGAAAACTGATGCAACTGGTGAAAATGTAAACGGGGAAGATGCTATTGATGTTGATGACAATGATGAAACTATTGATTGGATTTTGAAGCAGTAA 879 0.4187 MAPLATDALNIWQHVVKKSGWKDLEQSGGIEDGDQQQKAFDDADYSSSAIEGKSNSKKRRDIKDEDEDGEDREDITSLKKPRVVWSVELHQQFMAAVNQLGIDILSRIAIFGITPSRLSRLYSNSQISFPKAVPKKILELMNVPGLTRENVASHLQQSNFNNSFISSQDSTFGATSINGIDLQTLPVAGQLQAQSLAKLQAAGLGRSIAKAGIPMPLVEQKNLFNFENSKLRAIACNWWNQVSMCLSGYEINQGNQGGNTLEKTDATGENVNGEDAIDVDDNDETIDWILKQ. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02859 292 MobiDBLite consensus disorder prediction 24 39 - -
Seca4g02859 292 MobiDBLite consensus disorder prediction 24 74 - -
Seca4g02859 292 Gene3D - 76 163 - -
Seca4g02859 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 157 IPR006447 GO:0003677
Seca4g02859 292 SUPERFAMILY Homeodomain-like 78 157 IPR009057 -
Seca4g02859 292 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 38 228 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02859 Seca-Chr4 49355333 49357526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02859 1 232 Response Regulator Gene Family AT3G16857 47.059 9.39e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g02859 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02859 - K14491 gmx:100809583 241.891