Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02857 ATGGTTGGAAGCAATGAATCAATGACAAGTGATACTCTAGAGTTACAGGAACGACAAGCTTCCGTAATCTACTTAGAAGAGGATGAGGAAATCCCCATAGAACATGGTGGCGCATATTTCATTGATGAAGTAGGTGGTGGTGTATTCCTTGTTGATAATGATTGGGATGGTGAACAATCCGGAGAAGATGAACAATGGGATGAGCCTTGTACCGAAATTCCTCGTTTTGGGGATAGGGTCCCTAGATTTAGGATTGATAGTGAGGAGGATATTAAAGGGATGGACTTGAAGGCATTTAGTCCACATGAAATTGAAATGTATGACTTTGGTAGCATGGAATTGGCCTACAAGTTCTATAGTTCTTATGCAATGAGGAATGGGTTTTGTGTTAGGAAATCATCTATTGTGAGAAGCAAAAAAACAAGGGAGCCATATCAGCAAGAGTATGTTTGTAATAGAGCAGGCTTTAGACGGGATAATGGGAAAAGTGTTGAAGATATGAAACGTGAGCCTAGAGTTAATTTTAGATGTGGATGTTCTGCATTATTTCGTGTTCACATTGACTTTGTGACTTCCCGATGGTATTGTACTTGGTTTGATGATGATCACAACCATGATTTGTTGGATCCAATACACTGTGGGATGCTTCCAGCACATAGGAAGATGTCTGCTAGTGAAATAATGCAGATGAATGAAATGATGAAAGTTGGTATTAGTCCCTCTCACATTTATAGGTCATTTGCTTTGCAAGCCGGAGGTTATCAGAAAATTGGTTTTAGGAAAAAGGACTTGTATAACCAGATCCATCGTCAAATGCGTGAGCAATGTTCAGATGCGGTGGAAGCTCTAAAATACTTGAAGGATATTGGAGGGAAGGATGGTAAGATGTACATTGAGCACACAGTTGATAGTGAAGGGAGACTCCAACATTTGTTTTGGAGTGATGGTATTAGTCAGTTAGATTATCAAGTTTATGGTGATGTTTTGGCATTTGACGCTACATATGGCAAGAACAAATATTATTTGCCATTGGTGGTTTTCTCAGGTGTTAATAATCACAATCGGTCTACTATTTTTGGGGGTGCCATAGTTTCAAATGAGACAGAGGAGACATATGTGTGGGTGTTGAATCAATTTGTAAAAGCTATGAAAGGAAAGGAGCCTAAAGCAGTCATCACTGATGGTGATAATGCAATGAGAAATGCAATTAAAAGGGTTTTTCCTAATGCACATCATCGTTTGTGTGCATGGCATTTGTTACGTAATGCAACATCCAATGTAGGAAAGCCCGGTTTCACAGCTGAGTTAAAGAAGTGCATGTTGGGTGATTATGATTTGGATGAGTTTAGCCAAGCTTGGGATGAAATGGTCAGCAAGTATCATTTGGAGGACAATCATTGGGTCAATGCACTGTATGAGAAAAGGTCAATGTGGGCTACAGCTCATATCTGGGGTAATTTTTTTGCAGGTTTTACCACAACATCTAGATGTGAGGGACTACACTCAGAGTTGGCTAAGTTTGTGCACTCAAGGTACAACTTGACAGACTTCTTGCATCATTTTCACCATTGTTTAGAGCATATACGATTCAAAGAAAAGGAAGATGACTTCGCATCTCTACATGGGGACTCTGTGCTCCAAACCAAATACCCTTCCATTGAGAAATCTGTTGCAAAATATTTAACGAAGGAGTTGTTCATGAAATGTCGGTACTTTATAAACAAAGCAGCTGACTTTGTTGTAGTTGGTTGTTCAAAAACGCTAACAGTGTCCATTTTCACTGTTTGTAAGCGTGGAGGACGAGGCAAGGAATGGAAAGTGACACATGATGCAGGTAACAATGAATTTAAATGTGATTGCATGAGAATGGAGTCTCGGGGTTTGCCATGTGAACACCTAGTTGCTGTTCTTGTTCACTTGAGGATAAATGATCTTCCTAGGTGTTTTGTTTTGAAATGGTGGTCAAAAGGTGCGAAGGATGGTTTTTATGACCGTAATGGGGATGGAGACACTACATGGAATTCTTCACTGGTTTTTAGAAGTGATGAAGCGATGCATGTATGTAGATTGATTATTAAATTGAACGATACTGCCGAAGAACACCACGAATTTATGGATAAGCTTTTACAAATCTATGAGGAATGCAAGGCTAGGAAATCATGCCTTCATGGGGATGGTAGTTCTTCTAGCAGGTTTGTGGTTGAAAATTTGAGGGATCCTGTATGTGTTAGGACCAAAGGTCGGGGTGGGGGAAAATCCACAACCTTTGGTCTAGCAGTGCGTAGGAGGAAAAAGTGCTCTATATGTAAGGTTCCTGGGCACAATAAGCTAACTTGTCCACACAGTCAAAGACAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCCTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCCTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCCTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTGCCTACCCAAGACTTGGACACTGACATGATTGGTAGTCATATGTCAATGTGA 2778 0.4082 MVGSNESMTSDTLELQERQASVIYLEEDEEIPIEHGGAYFIDEVGGGVFLVDNDWDGEQSGEDEQWDEPCTEIPRFGDRVPRFRIDSEEDIKGMDLKAFSPHEIEMYDFGSMELAYKFYSSYAMRNGFCVRKSSIVRSKKTREPYQQEYVCNRAGFRRDNGKSVEDMKREPRVNFRCGCSALFRVHIDFVTSRWYCTWFDDDHNHDLLDPIHCGMLPAHRKMSASEIMQMNEMMKVGISPSHIYRSFALQAGGYQKIGFRKKDLYNQIHRQMREQCSDAVEALKYLKDIGGKDGKMYIEHTVDSEGRLQHLFWSDGISQLDYQVYGDVLAFDATYGKNKYYLPLVVFSGVNNHNRSTIFGGAIVSNETEETYVWVLNQFVKAMKGKEPKAVITDGDNAMRNAIKRVFPNAHHRLCAWHLLRNATSNVGKPGFTAELKKCMLGDYDLDEFSQAWDEMVSKYHLEDNHWVNALYEKRSMWATAHIWGNFFAGFTTTSRCEGLHSELAKFVHSRYNLTDFLHHFHHCLEHIRFKEKEDDFASLHGDSVLQTKYPSIEKSVAKYLTKELFMKCRYFINKAADFVVVGCSKTLTVSIFTVCKRGGRGKEWKVTHDAGNNEFKCDCMRMESRGLPCEHLVAVLVHLRINDLPRCFVLKWWSKGAKDGFYDRNGDGDTTWNSSLVFRSDEAMHVCRLIIKLNDTAEEHHEFMDKLLQIYEECKARKSCLHGDGSSSSRFVVENLRDPVCVRTKGRGGGKSTTFGLAVRRRKKCSICKVPGHNKLTCPHSQRQAPLHESEDDDIYFPTQDLDTDMIPGHNQHTCPHSQREAPLHESEDDDIYFPTQDLDTDMIPGHNQHTCPHSQREAPLHESEDDDIYFPTQDLDTDMIPGHNQHTCPHSQREAPLHESEDDDIYLPTQDLDTDMIGSHMSM. 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02857 925 SMART 26again6 616 643 IPR006564 GO:0008270
Seca4g02857 925 MobiDBLite consensus disorder prediction 883 903 - -
Seca4g02857 925 Pfam MULE transposase domain 328 422 IPR018289 -
Seca4g02857 925 Pfam FAR1 DNA-binding domain 117 208 IPR004330 -
Seca4g02857 925 ProSiteProfiles Zinc finger SWIM-type profile. 605 641 IPR007527 GO:0008270
Seca4g02857 925 PANTHER OS01G0519700 PROTEIN 108 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02857 Seca-Chr4 49340600 49348926 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g02857 MULE 3e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02857 - - tpra:123913749 748.814