Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02839 ATGGAGAATTCCCCTTCTCATCCCTTTTCTCCTCCTCCTCCTCCTTCTTCTTCACCCACCCCTTACCTCACCAATCTCGGCTTTGGCTATTCCATCGCCATCGCCCTCGGTTTCCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACTATCCGCAACCGCCGCAACAACCACGCCCAATCAGACGGCGTCGTTTTGCCGCGCATAATCTTCGTTGCGGAAGACGAGGAGGAACGGCAGCAGGACGGCGTCGTATTGGGACTTGACCAGAACGTGATCAACTCGTACCCGAGGTTCCAGTACACGAAGGATGTGGGACAGGACAGCACGTGCTCGATCTGTTTGTGCGAGTACAAGGAGTCGGAGATGTTGAGGATGATGCCCGAATGTCGCCACTACTTTCACCTCTGTTGCCTTGACTCATGGTTGAAGCTCAATGGCTCATGCCCTGTTTGCCGTAATTCGCCTTTGCCGACGCCCATTTCTACGCCGTTGCAAGAAGTGGTGCCGCTCTCTCACTATCCTGCTGATAGAAGGGCAAGGAGGTGA 564 0.5532 MENSPSHPFSPPPPPSSSPTPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTIRNRRNNHAQSDGVVLPRIIFVAEDEEERQQDGVVLGLDQNVINSYPRFQYTKDVGQDSTCSICLCEYKESEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPISTPLQEVVPLSHYPADRRARR. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02839 187 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Seca4g02839 187 PANTHER RING-H2 FINGER PROTEIN ATL67 9 186 IPR044289 GO:0016567|GO:0016740
Seca4g02839 187 SUPERFAMILY RING/U-box 98 163 - -
Seca4g02839 187 Pfam Ring finger domain 115 158 IPR001841 -
Seca4g02839 187 SMART ring_2 116 157 IPR001841 -
Seca4g02839 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02839 Seca-Chr4 49131018 49131631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02839 22 180 C3H Transcription Factor Family AT5G06490 38.122 4.04e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02839 - - vra:106773185 266.929