Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02823 ATGAGTGACATGACGAGTCTTCATGCACAAACACACATTTCTTCTTCTTTTGATACCATGGCTTACCCACCACATTATCGATCATCACAGTTGGGAGACACAACATTCACTAAATTGTTTGTTGGAGGACTCGCATGGGAGACTCCCACAGAAGAAATGCGCAAATATTTCGAGCAGTTCGGAGACATTCTTGAGGCTGTCATTATCACTGACAAGAACACAGGAAAATCCAAAGGCTATGGATTCGTAGTAACATTCTGTGATGAGGAATCAGCAAGAAGGGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTTTGGGAAGGACTCGACCATCACCACCAAGAGGAAGGAATATAGTTCAAGCAGGAGGAGGAAAAGCACAAGTTGTGGCGTCGTACAGTGGTGTTCCGGCAGTAGGACCACCATCACTGCCGCCACCAGCACCACCTCTTATGTACACACCATATGGCTATACAACCTACACTCCTGATTATGGTTACCACCAAGGCACATTGTACAACCCACAGTACTATCAACAACTCTATGGACCATCATCTCCTAACATGGGCATTGGTTCCCCATCATATTACTATGGCTATTCTGTGCAAGCACCACCAAGAAGCACATTTTCTTCACCTCAAGCAAATCGAGTATCAGCTGGACCCTCTTATCTATACTATCCTACACCTATGGATGTCTCCTTCTCTGGATATCGTCCACCCCAACAATCACCAATAAGGCAACCCTTTTCTTCCTCTACTGATTCACAGACTCAGCAGCCTACCTCTTCTGAGAGACAGCATTCGGAGTAG 840 0.4524 MSDMTSLHAQTHISSSFDTMAYPPHYRSSQLGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVVTFCDEESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRNIVQAGGGKAQVVASYSGVPAVGPPSLPPPAPPLMYTPYGYTTYTPDYGYHQGTLYNPQYYQQLYGPSSPNMGIGSPSYYYGYSVQAPPRSTFSSPQANRVSAGPSYLYYPTPMDVSFSGYRPPQQSPIRQPFSSSTDSQTQQPTSSERQHSE. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02823 279 CDD RRM_RBM24_RBM38_like 37 113 - -
Seca4g02823 279 MobiDBLite consensus disorder prediction 245 279 - -
Seca4g02823 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Seca4g02823 279 Gene3D - 8 134 IPR012677 -
Seca4g02823 279 MobiDBLite consensus disorder prediction 244 279 - -
Seca4g02823 279 SMART rrm1_1 38 111 IPR000504 GO:0003723
Seca4g02823 279 SUPERFAMILY RNA-binding domain, RBD 4 126 IPR035979 GO:0003676
Seca4g02823 279 FunFam RNA-binding protein 24-B isoform X1 23 134 - -
Seca4g02823 279 PANTHER BOULE-RELATED 15 273 - -
Seca4g02823 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02823 Seca-Chr4 48817652 48822455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02823 33 250 C2H2 Transcription Factor Family AT2G19380 26.364 3.58e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02823 K25006 - gmx:100811977 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02823 4 48817652 48822455 Seca4g02823 4 48817652 48822455 ECH
Seca8g01983 8 41878521 41884454 Seca4g02823 4 48817652 48822455 PCT