Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02811 ATGGATAAGCTATGCTGTTTCAAGTCTTCCTACTCTCAGCTTGTAGCTGCACGTTCTTCATCCAGCACTGGTAAGGGAAAAAATCAAGAAGGCTCAATAAAGTATGGTTTCAGCCTAGTAAAAGGGAGAGCTAATCATCCAATGGAGGATTATCATGTTGCCAAGTTTGTGCAGATACAGGAGAAAGAATTGGGTTTATTTGCTATTTATGATGGTCATTTGGGTGACCGTGTACCTGCCTACTTACAGAAACATTTGTTTACCAACATTCTAAGGGAGGAGGAATTTTGGAATGACCCCACTCTTTCTATCTCAAAAGCATATGAGAGCACAGATCAAGCAATTCTGTCACACAGTTCTGATTTGGGGCATGGTGGATCAACAGCAGTAACTGCAATATTGATCAATGGGCGAAGGTTATGGATAGCAAATGTTGGAGACTCACGAGCTGTTCTTTCAAGAAAAGGTCAAGCAGTACAAATGACTACAGATCATGAACCAAGCACAGAACGAGGCAGCATTGAGAATAGAGGTGGTTTTGTCTCCAACTTACCAGGTGATGTGCCTAGAGTAAATGGGCAACTGGCTGTTTCTCGTGCATTTGGAGACAAGAGTCTCAAGTCACATTTGAGATCAGACCCTGATGTTCAGCATACCGACATAGATGCTGATATTGATATTCTAATCCTTGCAAGTGATGGACTTTGGAAGGTAATGGCTAATCAAGAGGCAGTGGATATTGCTAGAAGAATGAGAGACCCGCAGAAAGCAGCTAAGCAGTTAACAGCTGAAGCATTACAGAGAGACAGTAAAGATGATATATCTTGCGTTGTGGTTAAATTCAGGTGA 849 0.4193 MDKLCCFKSSYSQLVAARSSSSTGKGKNQEGSIKYGFSLVKGRANHPMEDYHVAKFVQIQEKELGLFAIYDGHLGDRVPAYLQKHLFTNILREEEFWNDPTLSISKAYESTDQAILSHSSDLGHGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPSTERGSIENRGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQHTDIDADIDILILASDGLWKVMANQEAVDIARRMRDPQKAAKQLTAEALQRDSKDDISCVVVKFR. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02811 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Seca4g02811 282 FunFam Probable protein phosphatase 2C 39 25 282 - -
Seca4g02811 282 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Seca4g02811 282 SMART PP2C_4 30 279 IPR001932 -
Seca4g02811 282 SMART PP2C_SIG_2 45 281 IPR001932 -
Seca4g02811 282 CDD PP2Cc 33 281 IPR001932 -
Seca4g02811 282 Gene3D - 29 282 IPR036457 -
Seca4g02811 282 PANTHER PROTEIN PHOSPHATASE 27 281 IPR015655 GO:0004722|GO:0006470
Seca4g02811 282 SUPERFAMILY PP2C-like 32 281 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02811 Seca-Chr4 48623023 48626168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02811 1 282 PP2C-type Phosphatase Gene Family AT1G22280 73.264 1.21e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02811 K17506 - gmx:100797292 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02811 4 48623023 48626168 Seca4g02811 4 48623023 48626168 ECH