Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02784 ATGACGAATCAGAATGTGGTGACTCCTGAAATCAAGTCATGTATTAGTATGACAACGCTTATTGCCGTGGCAGCTTCCATTTCAAACTCACCCGTGTTACCAACTGAATCTCTTGCTGTTCTTGGTGGGTTCTTAGGCTTTCCAAACAAAAATTTTATGAAAAGGTTGGAAGGTTCTAAAGTTAACACCTGGATTGATTCAATGAGAGCTTCTTCTCCAACTCGTGTCAAATCTAACCTAACTGCTTCAGAAAACCAAGAAACGAGTTCTTGGATTCTTTATCATCCTTCAGCGCTGAACAAGTTTGATCAGATAACATATAACTCAAAAAGAAAACAGATTGTGATTTTTCTTGACTACGATGGAACTCTCTCTCCGATTGTTGCAGATCCAGATAAAGCTTTCATGACAAGAAAGATGAGAGCAACGCTTAAGGACATAGCAAGACATTTTCCCACTGCCATAGTTACTGGAAGATGCAGAGACAAGGTATTTAACTTTGTAAAATTAGGAGAATTGTACTATGCAGCAAGCCATGGAATGGACATTATGGGGCCAACAAAAAGCCCAAGTGCAGAGAAAGGTAATAATAATGAAGCACTGCGGTTCCAACCTGCGACTCAATTTCTACCAATGATCGATGAGGTGTACAAAATACTGCTAGAAAAAACAAAGTCTGTCCCAGGGGCTAAGGTAGAGAACAACAAATTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCACCATTGGCGGAGAAAGTTAGATTGGTGCTTAATGAGTACCCACAACTTAAGCTAACCCAAGGAAGAAAAGTGCTAGAGATTCGACCAACCATCAAATGGGACAAGGGCAGGGCACTTGAATTCTTGTTAGAATCACTAGGATACGAGAATTCTAATGACGTATTTCCGATCTATATTGGTGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGCAGAAGGGGTCAGGGGATTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCCCAGGCAAGTTGA 1068 0.4092 MTNQNVVTPEIKSCISMTTLIAVAASISNSPVLPTESLAVLGGFLGFPNKNFMKRLEGSKVNTWIDSMRASSPTRVKSNLTASENQETSSWILYHPSALNKFDQITYNSKRKQIVIFLDYDGTLSPIVADPDKAFMTRKMRATLKDIARHFPTAIVTGRCRDKVFNFVKLGELYYAASHGMDIMGPTKSPSAEKGNNNEALRFQPATQFLPMIDEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLNEYPQLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSRVPKETDASYTLQDPSQAS. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02784 355 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 50 354 IPR044651 GO:0004805|GO:0005992
Seca4g02784 355 NCBIfam trehalose-phosphatase 112 353 IPR003337 GO:0003824|GO:0005992
Seca4g02784 355 Gene3D - 206 282 - -
Seca4g02784 355 Gene3D - 116 348 IPR023214 -
Seca4g02784 355 SUPERFAMILY HAD-like 115 352 IPR036412 -
Seca4g02784 355 CDD HAD_TPP 115 351 - -
Seca4g02784 355 FunFam Trehalose 6-phosphate phosphatase 206 282 - -
Seca4g02784 355 FunFam Trehalose 6-phosphate phosphatase 212 355 - -
Seca4g02784 355 Pfam Trehalose-phosphatase 117 352 IPR003337 GO:0003824|GO:0005992
Seca4g02784 355 NCBIfam HAD-IIB family hydrolase 116 327 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02784 Seca-Chr4 47990810 47993281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02784 110 322 Trehalose Biosynthesis Gene Families AT1G70290 28.054 7.84e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02784 K01087 - gmx:100788641 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02784 4 47990810 47993281 Seca4g02784 4 47990810 47993281 ECH
Seca8g02020 8 43028441 43031333 Seca4g02784 4 47990810 47993281 PCT