Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02783 ATGGAAGGTGCTGCTACACGCGGTGACGTGACGATGACAACGCGCTGTTCACGCATCACGCAGAGGGTTGTTGTGCACGCGGACGGTGACCAGAGCAGAGCGAAACTGGTGGTGGTGCTTGAGTTGGCTGGGAACGCAACTCATAACAACAAGAAGAACAGGATTATCCCCAGGCATGTGCTGCTCGCAGTAAGGAACGATGAGGAGCTTGGGAACAAAGATGTGCTAAAAGCAGTATATCGTTTCAAGGAAGCTGAGAAAATGAATGGATTAGGAACCATAGTACCACCTTCAAGCTCCTCCAGTGGAGAATTTTCAACTGGACAAGAGAAGCTTTTTTCAATCTCAAGGGAGCATGACACTACTGCTCTGCGGGAATATGGAGGGGTTGTAGGGTTGTCACAATTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACCTGGCTATTGCGCTGATATCTTTGTATTTGTTGCCTTTCATAGATGTTTATCTGGGATGCTTGCAAGGATCTGACTTTGATTATTTTAATGGTAGTCGCCATAGCTTCATTTTAAGGCTGGCTTTTATGAAAGCAATCTTCAATCTTCACTCTCAGCATATTGATACATTCTAG 627 0.453 MEGAATRGDVTMTTRCSRITQRVVVHADGDQSRAKLVVVLELAGNATHNNKKNRIIPRHVLLAVRNDEELGNKDVLKAVYRFKEAEKMNGLGTIVPPSSSSSGEFSTGQEKLFSISREHDTTALREYGGVVGLSQLLKTNLEKGIQGDDADLAIALISLYLLPFIDVYLGCLQGSDFDYFNGSRHSFILRLAFMKAIFNLHSQHIDTF. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02783 208 PRINTS Histone H2A signature 48 62 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca4g02783 208 PRINTS Histone H2A signature 34 47 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca4g02783 208 Gene3D Histone, subunit A 19 84 IPR009072 GO:0046982
Seca4g02783 208 PANTHER HISTONE H2A 39 77 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca4g02783 208 SUPERFAMILY Histone-fold 39 71 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02783 Seca-Chr4 47970473 47972514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02783 76 152 Primary Pumps ATPases AT4G29900 48.718 7.64e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02783 K01537 - gmx:100790157 100.908