Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02781 ATGGCAGCTATGATGGATTTCTACAGCAGCACACAATTTCACTCAGATCCATTCAGGGGTGGTGAGCTTATGGAAGTTCTTGAACCTTTTATGAAAAGTTCTTCCCCAACCCCAACCCACTCTCCTTCTTCTTCTCCCTCTGCAACCTCATCCCCTTGTTCAAACTCCTCTCTCCCTTGTTCTTCTTTCTCTCCTTCCCCCAACTCCTTCTACTCCTCTCCTTCCCTTCCTCCCTATGGTTGCTCAACATCGATGACCCATGTATTTACAGACGGGTTATCCAACAGCCAAAATTTCATAGGCTTTGAGCAATCAAGTTCCATTCTTGGCCTCAACCACCTAACCCCATCTCAGATCAATCAGATCCAGGCTCAAATCCAGCAACAAAACTTGTCATGGAATCAGCGTCATCATCAGCCTCAGCATCTCAATCTCAACACCCTTAGCTTCCTCGGTCCTAAACCAATCCCAATGAAGCACGTGGCCACACCTCCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGGAAATGGGTCGCTGAGATTAGACTTCCAAAGAACCGAACAAGGCTCTGGCTTGGTACCTTTGACACAGCAGAAGAAGCTGCTTTGGCTTACGATAAGGCCGCTTACAAGCTCCGAGGTGACTTTGCAAGGCTCAATTTCCCCAATCTCCGACACCAAGGTTCCTCTGTTGGTGGAGATTTTGGTGAGTACAAGCCTCTTCATTCCTCTGTGGATGCAAAGCTTCAAGCCATTTGTGAAGGCTTGGCTGAGATGCAGAAACAGGGGAAGTCAGAGAAGTCTCAGAGCTCGTCCAAGAGGTCGAAAGTTGCTTCCAAGGTGGCTCCTCCGCCGGAGAAGGAGGAATCGGTTGATTTGAAGAAAGGTTCGGTGAAGTCTTGTTGCAAGGTTGAACCTTCGTTGTCTCCCGTGATGACAGAGAGCGAAGGATCTGAAGGTTCTTCGCCACTTTCGGATCTTACCTTTGGTGATGTGAGCGAGCCACAGTGGGAAGGTGATTCGGATAATTTCAATCTGCTCAAGTACCCTTCTTATGAGATCGATTGGGATTCCCTGTGA 1095 0.4886 MAAMMDFYSSTQFHSDPFRGGELMEVLEPFMKSSSPTPTHSPSSSPSATSSPCSNSSLPCSSFSPSPNSFYSSPSLPPYGCSTSMTHVFTDGLSNSQNFIGFEQSSSILGLNHLTPSQINQIQAQIQQQNLSWNQRHHQPQHLNLNTLSFLGPKPIPMKHVATPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKSEKSQSSSKRSKVASKVAPPPEKEESVDLKKGSVKSCCKVEPSLSPVMTESEGSEGSSPLSDLTFGDVSEPQWEGDSDNFNLLKYPSYEIDWDSL. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02781 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 364 - -
Seca4g02781 364 FunFam Ethylene-responsive transcription factor 2 169 228 - -
Seca4g02781 364 MobiDBLite consensus disorder prediction 31 51 - -
Seca4g02781 364 SMART rav1_2 170 233 IPR001471 GO:0003700|GO:0006355
Seca4g02781 364 MobiDBLite consensus disorder prediction 265 348 - -
Seca4g02781 364 MobiDBLite consensus disorder prediction 285 304 - -
Seca4g02781 364 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700|GO:0006355
Seca4g02781 364 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700|GO:0006355
Seca4g02781 364 MobiDBLite consensus disorder prediction 316 334 - -
Seca4g02781 364 CDD AP2 169 229 IPR001471 GO:0003700|GO:0006355
Seca4g02781 364 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Seca4g02781 364 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Seca4g02781 364 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Seca4g02781 364 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677
Seca4g02781 364 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02781 Seca-Chr4 47953767 47954861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02781 1 364 AP2-EREBP Transcription Factor Family AT1G78080 51.706 9.27e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g02781 AP2 8.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02781 K09286 - gmx:732559 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02781 4 47953767 47954861 Seca4g02781 4 47953767 47954861 ECH
Seca8g02029 8 43237197 43238282 Seca4g02781 4 47953767 47954861 PCT