Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02764 ATGGATCCTCCTACTGACAAAGATTTTGAGAAAAAAGAGATGGATGCAAGAAGTTTGTCATCTTCACATAATCAGGCACCATACGTCCACAAAGTGGCAGTTCCTCCAAGACAGAATCTCTTCAAGGAATTCCAAGCCACTATAAAAGAAACTTTCTTTGCTGATGATCCTCTAAGACCCTTCAAAGATCAACCTAAATCACGGAAATTCATCCTCGGAATTGAGGCCATATTCCCCATACTTAATTGGGGAAGAACTTACAACCTTACAAAATTTCGGGGGGATATTATATCTGGTCTCACTATTGCAAGCCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGGCTCCACAGTATGGACTGTTTGAACTAAAATCTTGTTGCCTTTTGTTCTACTTCTTTACAGACTCCAGCTTTGTTCCACCACTGATTTATGCTGCCATGGGTAGTTCTCGTGATATTGCAATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACTTTACTTAGTAATGAGATTGATCCTGATACACATGCAGCAGAATATAGGCGACTTGCTTTTACAGCTACTTTTTTTGCTGGGATTACCCAAGCAACACTTGGGATTTTTAGGTTAGGATTCTTGATTGACTTCCTATCCCATGCTGCTATTGTCGGTTTTATGGGGGGTGCTGCCATCACAATTGCTCTTCAACAGCTTAAGGGTTTCCTTGGTATTAAAAGTAAAATGTTCACCACGAAAACTGATATTGTCTCTGTGATGCATTCAGTATTCTCATCAGCACATCATGGAATTGTAAACTGTTTTCTTATTATTTCTTGTCATGTGGATCAGGGAAAGAAGAACAAGAAATTCTTCTGGGTGCCAGCAATTGCCCCATTGATATCCGTTGTGTTGTCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTAAATCATATACAGAAAGGGATCAATCCTTCATCCATTGAAAAAATTTATTTTAGCGGTGAATACCTTGGGAAAGGTTTTAGAATTGGCGTCCTGGCAGGCATGATAGCATTGACTGTGAGTAAATTTGACACTCTAATTAAACCATTAAATTTTGGTTCTCAGGAAGCCATAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTAGCATTAGGAACAATGAATATTGTTGGTTCAATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCTGCGGTAAATTTCATGGCTGGCTGTCAAACTGCGGTCTCTAATATTGTGATGTCAATAGTTGTGTTCTTAACCCTGCAATTCATCACTCCTCTTTTTAAGTACACTCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAACCTTGTGGATTATCAGGCAGCAATTTTGATTTGGAAGATTGATAAATTTGATTTTGTGGCTTGCATGGGAGCATTCTTTGGGGTTGTTTTTGTCTCAGTTGAGATAGGACTTCTAATTGCTGTCTCCATATCCTTTGCAAAGATCTTACTACAAGTCACAAGGCCCCGAACTGCTATTCTGGGGAGGATTCCTAGGACTTCTGTCTATAGAAACATCCAACAATACCCAGAAGCTAGTAAGGTTCCCGGTGCACTGATTGTAAGAGTGGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGTTATTAAGATGGTTGATAGATGAAGAAGAACAAGTGAAAGGAGACTACCACACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCGGTTACTGACATCGATACCAGTGGCATCCATGCCTTTGAAGAGTTACACAGAAGTCTTGCAAAGAAAGGTGTTGAGCTCGTTCTGGCAAATCCTGGCCCGGTAGTGACGAACAAGCTTTACACATCCAATTTTGCAAACACGATCGGTGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTATTGCGTACTGTTCTCCAAAGCTGGCTGAGGACCCATGA 2040 0.4039 MDPPTDKDFEKKEMDARSLSSSHNQAPYVHKVAVPPRQNLFKEFQATIKETFFADDPLRPFKDQPKSRKFILGIEAIFPILNWGRTYNLTKFRGDIISGLTIASLCIPQDIGYAKLAHLAPQYGLFELKSCCLLFYFFTDSSFVPPLIYAAMGSSRDIAIGPVAVVSLLLGTLLSNEIDPDTHAAEYRRLAFTATFFAGITQATLGIFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKSKMFTTKTDIVSVMHSVFSSAHHGIVNCFLIISCHVDQGKKNKKFFWVPAIAPLISVVLSTFFVFITRADKQGVEIVNHIQKGINPSSIEKIYFSGEYLGKGFRIGVLAGMIALTVSKFDTLIKPLNFGSQEAIAIGRTFASMKDYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSIVVFLTLQFITPLFKYTPNAILSAIIISAVINLVDYQAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGRIPRTSVYRNIQQYPEASKVPGALIVRVDSAIYFSNSNYVKERLLRWLIDEEEQVKGDYHTKIQFLIVEMSPVTDIDTSGIHAFEELHRSLAKKGVELVLANPGPVVTNKLYTSNFANTIGEDKIFLTVAEAIAYCSPKLAEDP. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02764 679 CDD STAS_SulP_like_sulfate_transporter 549 664 - -
Seca4g02764 679 Gene3D STAS domain 528 675 IPR036513 -
Seca4g02764 679 ProSiteProfiles STAS domain profile. 548 671 IPR002645 -
Seca4g02764 679 FunFam Sulfate transporter 31 528 674 - -
Seca4g02764 679 Pfam Sulfate permease family 92 496 IPR011547 GO:0016020
Seca4g02764 679 NCBIfam sulfate permease 79 667 IPR001902 GO:0016020|GO:0055085
Seca4g02764 679 Pfam STAS domain 549 667 IPR002645 -
Seca4g02764 679 SUPERFAMILY SpoIIaa-like 550 672 IPR036513 -
Seca4g02764 679 MobiDBLite consensus disorder prediction 1 18 - -
Seca4g02764 679 PANTHER SULFATE TRANSPORTER 38 672 IPR001902 GO:0016020|GO:0055085
Seca4g02764 679 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02764 Seca-Chr4 47641877 47648791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02764 4 678 Inorganic Solute Cotransporters AT1G22150 70.073 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02764 K17470 - gmx:100804208 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02764 4 47641877 47648791 Seca4g02764 4 47641877 47648791 ECH
Seca8g02048 8 43793627 43799258 Seca4g02764 4 47641877 47648791 PCT