Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02759 ATGTCGTCATCGTCGTCGAATTCTTCTCCGTGTGCAGCGTGTAAGATTCAGCGGAGGAAGTGCACCGAGGAATGCGTTTTTGCACCGTATTTTCCGCCGGATAACCCCCAAAGATTCGCTTATGTGCACAAAGTATTTGGGGCCAGCAACGTGGCCAAGCTTCTCAATGAGGTGAACGCAACACAGCGTGAAGACGCTGTCAAATCACTCGCCTATGAAGCTGAGGCAAGGCTAAAGGACCCTGTCTATGGTTGTGTGGGTCTCATCTCACTCCTTCAACACAAACTCAAACACTTGCAGAATGAACTTAACAATGCTAAGAAGGAACTTGCTTCTTACATTGGACCCCATGCTATGCTTCCCCAACCACCCCGAAATCCTCCTCTCTTTCCCTTCAACACCAACCCTGTCACTACTACTACTCCTCAACCTCATGATTTTTTCGCCTTCAACCACGATGGGGCTTCCACTTCCCAAGTCACTGCCCTCCCTCTCTGTCCTCCTGATCACTCTTTTCCCCATCAATTAATGTTTTCACCGCAACCACACCACTCCTTCTTGTCCCAGAAGCTTTTCAAGTCTGAGAGCCACAACCACGCAGAGTGTAGGACCACTGCTCCATCTGATTGA 630 0.4937 MSSSSSNSSPCAACKIQRRKCTEECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEVNATQREDAVKSLAYEAEARLKDPVYGCVGLISLLQHKLKHLQNELNNAKKELASYIGPHAMLPQPPRNPPLFPFNTNPVTTTTPQPHDFFAFNHDGASTSQVTALPLCPPDHSFPHQLMFSPQPHHSFLSQKLFKSESHNHAECRTTAPSD. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02759 209 Coils Coil 89 109 - -
Seca4g02759 209 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Seca4g02759 209 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Seca4g02759 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02759 Seca-Chr4 47472680 47474683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02759 5 121 AS2 family AT5G66870 77.778 9.25e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g02759 LOB 3.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02759 - - ccaj:109810786 230.335