Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02744 ATGGACATATATGAGTCATTCCAGCAAGTTAGCATGTGGGGGGACAACTTTAAAGTTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGTTACTGGTGAATACTACCATAGAGAACAAGCCTGAATATATTCCTCATGAACCAAGGGAGCCTTCTGGAACTGATCAAGAGACTACAAATAAAGATGTTAGTAAGGTTCTAAGACGCCTTGCTCAGAATAGAGAGGCTGCTCGGAAAAGTAGGCTGCGGAAAAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAACTCATGCAATTGGAACTGGATATTATGAAAGCAAGAAAGCAGGGTCTGTACATTGGCAATGCATTAGATGCCAGTTACATGGGATCTTCTGAAACAATAAACCCAGGAATTGTTGCATTTGAAATTGAATATGGACATTGGGTTGAAGAGCAACAAAGACAGAATGAAGAACTTAGAAATGCATTTCAAACTCACGCATCTGATGTACAGCTTCGTCTACTTGTTCAGAGTACCTTGAACCATTACTCAAATCTTTTCAGAATGAAAGCTGATGCTGCAAAGGTTGATGTCCTCTATTTAATCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGATCACGCCCGTCACAGCTTCTAAATCTCATTGTGCCACAACTTGAGCCTTTGACTGAACCACAAATTGTTAGTATTAACAAACTTCGCCAATCATCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGAAAAACTCCAGCAGAGTCTGGTCAATGACATGGCAGTTGACCCTATGAGTGTAGGAAACTTTGGAATTCAAATGTCTATTGCCATAGAGAAATTTGAGGCACTAGAAAGCTTTGTAAGCCAGGCAGACCACCTTAGGCAACAAACTCTGTTGCACATGTCACGAATCCTGTCAACACACCAAGCAGCTCGGGGATTGCTAGCTCTTGGGGAATACTTTCACCGTCTTCGTACTCTTTGTTCTCTTTGGACCGCTCGTCCATATTCTTCAGGGCAGCGTTTCACCGAATCGGTTCGAAAATCACAGGGAAACTATGAGCAATCTGAGAACCCTATACACCAATTTCGATTTAGGGCTTCGTTTCGGAACCCTAATTGCAAGCCCCGTTCGAACTGTACTGTGCCCTGGTTTCGCGTGAATCAGAGGAGGACTGTGGCCAAAGCATCAAGCTGGGATGAACAAAAGTCCCCATATGAAACTCTTGAATTGGAAAGAGATGCTGACGAGGAGCAGATAAAGAATGCTTACAGACGTTTGGCCAAATTTTATCATCCAGATGTTTATGATGGTAGAGGAACCCTTGAGGAAGGTGAAACAGCAGAAGCTAGGTTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGAAGAGAAGCGAAGACAGTATGACATGGATAACCGGGTCAATCCTATGAAGGCATCTCAAGCATGGATGGAATGGCTTATAAAAAAACGAAAAGCTTTTGATCAGCGGGGTCATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTGAATCTTCGTGTGCGCCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAAGATCTTGGCAAGAGAAAAGAAGGCTTCAGCTGAAAATTTCAGCAATACCCTTAAAAGGCACACACTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAAATTATCAGCCAGCTCTTAGCAGCAGAAGGTCTTGAGCTTGATTCAGAGAGTGATGATGCAATGTAG 1821 0.4278 MDIYESFQQVSMWGDNFKVDGSLNSIASPMLLVNTTIENKPEYIPHEPREPSGTDQETTNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELDIMKARKQGLYIGNALDASYMGSSETINPGIVAFEIEYGHWVEEQQRQNEELRNAFQTHASDVQLRLLVQSTLNHYSNLFRMKADAAKVDVLYLISGVWKASVERIFLWIGGSRPSQLLNLIVPQLEPLTEPQIVSINKLRQSSQQAEDALSQGLEKLQQSLVNDMAVDPMSVGNFGIQMSIAIEKFEALESFVSQADHLRQQTLLHMSRILSTHQAARGLLALGEYFHRLRTLCSLWTARPYSSGQRFTESVRKSQGNYEQSENPIHQFRFRASFRNPNCKPRSNCTVPWFRVNQRRTVAKASSWDEQKSPYETLELERDADEEQIKNAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDEEKRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGHMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARKILAREKKASAENFSNTLKRHTLILKKRDLMRRKAEEEKKKIISQLLAAEGLELDSESDDAM. 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02744 606 Gene3D - 64 116 - -
Seca4g02744 606 Coils Coil 145 165 - -
Seca4g02744 606 PRINTS DnaJ domain signature 457 477 IPR001623 -
Seca4g02744 606 PRINTS DnaJ domain signature 434 449 IPR001623 -
Seca4g02744 606 PRINTS DnaJ domain signature 503 522 IPR001623 -
Seca4g02744 606 PRINTS DnaJ domain signature 416 434 IPR001623 -
Seca4g02744 606 Pfam DnaJ domain 415 482 IPR001623 -
Seca4g02744 606 FunFam Chaperone protein dnaJ 400 505 - -
Seca4g02744 606 SUPERFAMILY Chaperone J-domain 409 483 IPR036869 -
Seca4g02744 606 Gene3D DnaJ domain 399 503 IPR036869 -
Seca4g02744 606 MobiDBLite consensus disorder prediction 42 63 - -
Seca4g02744 606 CDD DnaJ 415 474 IPR001623 -
Seca4g02744 606 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Seca4g02744 606 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Seca4g02744 606 Coils Coil 91 111 - -
Seca4g02744 606 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Seca4g02744 606 FunFam BZIP family transcription factor 64 113 - -
Seca4g02744 606 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700|GO:0006355
Seca4g02744 606 PANTHER TRANSCRIPTION FACTOR TGA9 1 346 - -
Seca4g02744 606 SUPERFAMILY Leucine zipper domain 65 98 IPR046347 GO:0003700|GO:0006355
Seca4g02744 606 SMART brlzneu 61 119 IPR004827 GO:0003700|GO:0006355
Seca4g02744 606 MobiDBLite consensus disorder prediction 41 63 - -
Seca4g02744 606 ProSitePatterns Nt-dnaJ domain signature. 462 481 IPR018253 -
Seca4g02744 606 ProSiteProfiles dnaJ domain profile. 414 485 IPR001623 -
Seca4g02744 606 SMART dnaj_3 413 477 IPR001623 -
Seca4g02744 606 Coils Coil 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02744 Seca-Chr4 47101225 47109578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02744 1 345 Calmodulin-binding Proteins AT1G22070 54.972 2.62e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g02744 DOG1 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02744 K14431 - gmx:100794268 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02744 4 47101225 47109578 Seca4g02744 4 47101225 47109578 ECH