Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02736 ATGCCTCGCCAACTTCCGCCACAGCCGCCGCAGCCGCCGAAGCCTATGCCTGTGGATTCCAAAATCTGGCGAGCATGCGCCGGCGCCTCCGTTCAAATCCCTGCCGTCAATTCTAGGGTTTACTACTTCCCTCAGGGCCACATGGACCAAGCCTCTTCCCCTCCGCAGAACCTTTCTCCTCTCCTACTTTCCAGGCCATTCATCCTCTGTAAAATCACCGCCGTTCAATTCCTCGCTGATCCACTCACCGACGAGGTCTTCGCCAAACTCCTACTCCGCCCTATCACCGATTTCTCCGCCGCTTCTCCCCGCTTTTCTTCTCCCCCCGACGACAACAACAAGGTCTTGTCGTTCGTCAAGATTCTGACGCCTTCTGACGCCAACAACGGCGGCGGATTCTCCGTTCCGAGGTTCTGCGCCGATTCCATCTTCCCGGCTCTCAACTACGAGGACGAACCGCCGGTGCAGACCTTGTCCATCACCGATGTCCACGGCGAGGAGTGGCAGTTCCGCCACATTTACCGCGGCACACCGAGGAGGCACTTGCTCACCACCGGATGGAGCAAGTTCGTCAACAAAAAGAACCTCGTCGCTGGTGATTCCGTGGTTTTCATGAAGAACTCCACGGAGAAGATGTTCGTCGGGATCCGCCGCGCCACGCGGTTCGCTTCGGCAAACTGCGGCGACGGGGCCAGGCGTTTCTTGCTCGGGGTGAGAAACAGGGCCCAGGAGGAGCACCAGCAGCAGGAAGAGAAGACCAACAAAGAGGGGTTTTCGAGGAACGGGAAGGGGAAGTTGTCGGCGAAGTCGGTTGCGGAGGCAGCAGAATTGGCAGCACAGAACATGCCATTTGAGGTTGTGTACTATCCGAAGGCTGGGTGGTCGGATTTTGTGGTGAAGGCGGAGACTGTTGACGAAGCGATGAGGGTTGTGTGGAGTCCCGGAATGAGAGTCAAAATGTCTGTGGAGAATGATGAATCGTCCAGGATGACATGGTTTCAGGGTGCAGTCTGTTCAGTCTCTGTTCCTGATAATGTCCCTTGGCGAGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAACCTGAAGTGTTGCAGAATTCAAAGTGGGTCAGCCCTTGGCAGGTCGAACTTGTTTCTACCACACCCGCGCTTCATACAGCATTTCCCCCTCTAAAAAAGTTTAGAGCTGCTCAGGGTTCTCAGGAGGGAGACCCCTTTCCTATGATTGGATTCACTAATTCAACAATGGGACACTTCAATCAAACATTGTTTGGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTCTTTTCTGCATCAAGTTTTTCCAACTTTCCATGTGATAACCCTCGTCTGTGTATGGGTAATACCTTTGTGAACAACACAGTGCCAAGGTTGAAAACTGTTTCAACAGAGCTAAATGTTGGCAGTTCTCAATCTGACGACTTGTCCCCAGATAGCCAGAGTAGTTTGCATTCCTTTGGGGCAGAATATGTTGGGAACCACAACTGCAGCTCAACAAAACCCGAGTCTGTTTCATTTCAGTTATTTGGTACAGTTATTCAGACAAAACTGCCTGTTGAAAATGGTTTACATGGTACTGGGTGCACAGGAGATGATAGCAGTAAGGGCTGTAATGAAAATGAAGGCATTGACAATACACTGGATGTTTCTTTGTCGTACTCAAAATTGCTTGACCGGCTTGATGACCAATGCCCAAGATCCTCGACAGTCAAGGCTTGTTATTTGTGA 1770 0.5175 MPRQLPPQPPQPPKPMPVDSKIWRACAGASVQIPAVNSRVYYFPQGHMDQASSPPQNLSPLLLSRPFILCKITAVQFLADPLTDEVFAKLLLRPITDFSAASPRFSSPPDDNNKVLSFVKILTPSDANNGGGFSVPRFCADSIFPALNYEDEPPVQTLSITDVHGEEWQFRHIYRGTPRRHLLTTGWSKFVNKKNLVAGDSVVFMKNSTEKMFVGIRRATRFASANCGDGARRFLLGVRNRAQEEHQQQEEKTNKEGFSRNGKGKLSAKSVAEAAELAAQNMPFEVVYYPKAGWSDFVVKAETVDEAMRVVWSPGMRVKMSVENDESSRMTWFQGAVCSVSVPDNVPWRGSPWRMLQITWDEPEVLQNSKWVSPWQVELVSTTPALHTAFPPLKKFRAAQGSQEGDPFPMIGFTNSTMGHFNQTLFGYGTFPAGMQGARHDLFSASSFSNFPCDNPRLCMGNTFVNNTVPRLKTVSTELNVGSSQSDDLSPDSQSSLHSFGAEYVGNHNCSSTKPESVSFQLFGTVIQTKLPVENGLHGTGCTGDDSSKGCNENEGIDNTLDVSLSYSKLLDRLDDQCPRSSTVKACYL. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02736 589 SMART B3_2 118 220 IPR003340 GO:0003677
Seca4g02736 589 CDD B3_DNA 117 218 IPR003340 GO:0003677
Seca4g02736 589 Gene3D - 115 220 IPR015300 -
Seca4g02736 589 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Seca4g02736 589 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g02736 589 FunFam Auxin response factor 116 220 - -
Seca4g02736 589 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g02736 589 MobiDBLite consensus disorder prediction 242 264 - -
Seca4g02736 589 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Seca4g02736 589 Gene3D - 312 385 - -
Seca4g02736 589 MobiDBLite consensus disorder prediction 242 259 - -
Seca4g02736 589 SUPERFAMILY DNA-binding pseudobarrel domain 112 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02736 Seca-Chr4 47004571 47008862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02736 18 568 B3 DNA Binding Superfamily AT1G77850 49.561 1.01e-177 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g02736 B3 1.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02736 - - lang:109326149 708.753