Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02730 ATGCCTCGCCAACTTATGCCACAGCCGCCGCAGCGGCGGAAGCCGGAGAAGCCTAGCCTTGTGGACCCCAAAATCTGGCGAGCATGCGCCGGCGCCTCCGTTCAAATCCCTGCCGTGGATTCTAGGGTTTACTACTTCCCTCAGGGCCACATGGACCAAGCCTCTTCCCCTCCGCAGAACCTTTCTCCTCTCCTACTTTCCAGGCCATTCATCCTCTGCAAAGTCTCCGCCGTTCAATTCCTCGCTGATCCACTCACCGACGAGGTCTTCGCTAAACTCCTACTCCGTCCTCTCACTAAATCCTCCGCCGCTTTGACCCGCCCTCCTCCTCCCCCCCCCGACGACGACAACAAGGTCATGTCCTACGCCAAGATTCTGACCCCTTCCGACGCCAACAACGGCGGCGGATTCTCCGTTCCGAGGTGTTGCGCCGATTCCATCTTCCCGACGCTCAATTACGAGAACGATCATCCTGTGCAGACCTTGTCCATCACCGATGTCCACGGCGAGGAATGGCAGTTCCGCCACATTTACCGCGGCACGCCGAAGAGGCACTTGCTCACCACCGGGTGGAGCACGTTCGTCAACACCAAGAATCTCGTCGCTGGAGATTCCGTGATTTTCATGAAGAACTCCTCGGAGAAGATGTTCGTGGGGATCCGCCGCGCCACGCGGTTTGCTTCGGGCTGGGACGGGGCCAGAAGTTTCATTCTCGGGGTGAGAAACAGGGTCCAGGAAGAGCACCAGCAGCAGGAAGAGAAGACGAACAAAGAGGTGTTTTCAAGGAATGGGAAGGGGAAATTGTCGGCGAAGTCGGTTGCGGAGGCAGCAGAATTGGCAGCACAGAACATGCCATTCGAAGTTGTGTACTATCCGAAGGCTGGGTGGTCGGATTTTGTGGTGAAGGCGGAGACTGTTGACGAAGCAATGATGGTTGCGTGGAGTCCCGGAATAAGAGTCAAAATGGCTGTGGAGGCAGATGATTTGACCAAGATGACATGGTTTCAGGGTGTAGTTTGTTCGGTCTCTGTTCCTCCTGATAATGTCCCTTGGCGAGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGGACCTGAAGTGTTGCAGAATTCAAAGTGGGTCAGCCCTTGGCAGGTGGAACTTATTTCTACCACACCTGAGCTTCATACAGCATTTCCCCCACTAAAAAAGTTTAGAGCTGCTCAGTGTTTTGGGGAGGGAGACCCCTTTTCTATGACAGGATTCACTAATTCAACAATGGGACACTTCAATCAAACATTGTTTGGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTCTTTTCTGCATCAAGTTTTTCCAACTTTCCAAGTGATAAGTTTCGTCTGTGTATGGGTTATTCCTCTATGAACAACACAGTGCCAGGGTTGAAAGCTGTGTCAACAGAGCTAAATGTTGGCAGTTCTCAATCTGACGACTTGAACCCCCATAGACAGAGTAGTTTGCATTCCTCTGGCACAGAATATGTTGGGAACCACAACTGCAGCTCAACAAAACCCGTACCTGTTTCATTTCAGTTATTTGGTACAGTTATTGAGACAAATCGGCTTGCTGAAAACGGTTCCCATAATACTGGGTGCGCAGGAGATAAAAGCAGTAAGGGCGGTAATGAAAATGAAGGCATTGACAATAGACGGGATGATTCCGGCCTTTATTAG 1713 0.5172 MPRQLMPQPPQRRKPEKPSLVDPKIWRACAGASVQIPAVDSRVYYFPQGHMDQASSPPQNLSPLLLSRPFILCKVSAVQFLADPLTDEVFAKLLLRPLTKSSAALTRPPPPPPDDDNKVMSYAKILTPSDANNGGGFSVPRCCADSIFPTLNYENDHPVQTLSITDVHGEEWQFRHIYRGTPKRHLLTTGWSTFVNTKNLVAGDSVIFMKNSSEKMFVGIRRATRFASGWDGARSFILGVRNRVQEEHQQQEEKTNKEVFSRNGKGKLSAKSVAEAAELAAQNMPFEVVYYPKAGWSDFVVKAETVDEAMMVAWSPGIRVKMAVEADDLTKMTWFQGVVCSVSVPPDNVPWRGSPWRMLQITWDGPEVLQNSKWVSPWQVELISTTPELHTAFPPLKKFRAAQCFGEGDPFSMTGFTNSTMGHFNQTLFGYDTFPAGMQGARHDLFSASSFSNFPSDKFRLCMGYSSMNNTVPGLKAVSTELNVGSSQSDDLNPHRQSSLHSSGTEYVGNHNCSSTKPVPVSFQLFGTVIETNRLAENGSHNTGCAGDKSSKGGNENEGIDNRRDDSGLY. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02730 570 CDD B3_DNA 121 222 IPR003340 GO:0003677
Seca4g02730 570 FunFam Auxin response factor 120 224 - -
Seca4g02730 570 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g02730 570 Gene3D - 119 224 IPR015300 -
Seca4g02730 570 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g02730 570 Gene3D - 314 388 - -
Seca4g02730 570 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Seca4g02730 570 MobiDBLite consensus disorder prediction 537 570 - -
Seca4g02730 570 SUPERFAMILY DNA-binding pseudobarrel domain 117 230 IPR015300 -
Seca4g02730 570 MobiDBLite consensus disorder prediction 554 570 - -
Seca4g02730 570 MobiDBLite consensus disorder prediction 482 513 - -
Seca4g02730 570 SMART B3_2 122 224 IPR003340 GO:0003677
Seca4g02730 570 Pfam Auxin response factor 276 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g02730 570 Pfam B3 DNA binding domain 123 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02730 Seca-Chr4 46874760 46877451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02730 21 558 B3 DNA Binding Superfamily AT1G77850 46.607 2.11e-165 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g02730 B3 3.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02730 - - aprc:113852457 683.715