Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02722 ATGCTTTCGTTCTTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGGCCGATGTCTGAGCCGGAAGAACATGGCGGAAGAAGAGGGTGCCACCGCCGAGGAGAGGCCGTGTCTGGCCAATTTTCCGGCGGAATTTCCCGACAATTCCGCCGCGTTTAAAATCGATTACTTCTCGCAGGCGAGGAAAGCGCTCAGCGAGCGCTCGCCTTTCGATGTTGCAGAAGAAACGTCGACTTCTGCTGCGGTTACTCTGCCGAGTGGGTTGGCGAGTTTGTTGAACCGTCACGCCGATAACCGGAGGCGCCACAAGAAGTCTCATTCTGGCGGTGGCGAAAAGAAGAAGAAGAAATCGTCTAGGGCGAACGAGAAGTCGCGGGCTTCCAACATTTGGGTTGAGACGGAGGAGTACTTTAGGGACTTAACCTTGGCTGATATCGACACCTTGTTTGAGGTTTCTTCGTCTTCTAGTTTAGCTTCTCGGGAGTGTTTTTCGATTCCGCTTTTGAGCAATGCTCCAAGGTTCAATGTAGTTAGTACTGATTGTGAGGATGAAATAAAGCGTACTATTTATGAGAATGAAAAGAAGCGTACTAGTTGTGAGGATGAAAAGAAACCTGGTCTAAATTTCAACGTAGCTAGTAGTGAGGATGAAAAGAAGGCCGGTGAAGACAAGAAACCTGGCCTAAATTTCAATGTAGCTAGTAGTGAGGATGAAGAGAAGGCCGGTGAAGACGTGAAAAATGAGGAAGGTTTCTTGGGAATTGAGTCAATTGACAATGTTACTGCTGAAAGAGACTTGCCTCAGGATGACAAGGATGGCGATATTTCTGATTCTTCTATTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGATTTCTTTAACTTCTGAGCGCCCTTCCAAGAAAAGGAAGCTTTTGGGTGAAGATGCTGGTTTGGAGAAGGTTTTAATGACTAGTCCTTGTGATGGGAACCAACCGTTTTGTCATTTTTGCGGCAGGGGAGACACTGGCACTGACAGAGATTCCAATCGGTTAATCGTCTGCGTTTCTTGTAAAGTTGCCGTTCATCGGAAGTGCTATGGTGTGCATGATGATGTAGATGAGTCTTGGTTGTGTTCTTGGTGTAAGCTTAAGGGTGGTGTTGATGACTCAGTGAACCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCTTTAAAACCAGTTAACATCAGTGTGGAAGGTGGTGGCTCTGCTCAGTTTGTGCACTTGTTTTGTTGTTTGTGGATGCCCGAGGTTTATATAGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGACGTCAAGGAAACCCGGAGAAGATTAGTGTGTAATGTTTGCAAAGTGAAATGTGGTGCATGTGTTCGGTGTAGTCATGGAACCTGCAGAACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACACAGAATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAACAGAAGCATCTTGCCACTGGGAGGCTCTAATGCAGTTGGCAGTGAATGTTCAGAAGCCAATGACCTTCTGGTGACATTGCCAGTAAGTAGCGAACACAGTGTGAAAATTGGTTGTGGCAATGGAGTGTTGGTATCTGATAGCAATCCAGACAAATTGAACCATAATGATGAACCACCAGATGGAGGATTGTCTGATTGTAGGTTCGGCGCTCACAATATGTTGGAATGTGGTCCTGTGCCCCAACATAATATTGGAGTGGTAGGGAGAACCAATGAGAATATCGATACGTCTGACTCTCTCAGTTTTGCTCTTGTTTTGAAGAAGTTGATAGATCGAGGAAAAGTTGATGTAGAAGATGTAGCATTGGAGATTGGCATTTCACCAGATATATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTGCGACACAAAATAGTTAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAAGGTTTAAAAGTCAAATTCAAATCAGCCAATGCATCCAAGGATGAAAGTGGAGCCACAGATGGTTCTGATACTTTACCAATATCAGATTCTGGTTTGCTGGATCCTGTTGCAGTTAAGTCAGTACCACCAAGGAGAAGAACTATAAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGTGTTACAAATGAGAGTGGGGTGCCAATAGACAAGTTCAGAGTAGGTCAGCCCGACTGTGAAAATCCAGGAAGCTCCAATGAAGCATCCATTCCTGATGCCACTGAAATGAAAGTAACCAAGTCTGAGGATACATTTCATGAAGTTCAAGGCAATGCTGATGAACCATACAAACCCAGCTTATCTGGATGCATTTCAGAAGAGAAGTCTACTGCTTGTTTGCAGAATGCTTCTATGCTTTATGATCAAAGCTGTCCTGCTCATTCTGCTTCACAACCACCTGATTCTGGTTTCATAAAGGTGGAAGCAATCTCTAATTACATTCACCCATACATCAACAAGAAATTGGTGCAATTTCGTGGTGGGTTGCCCTTGGAGGACATTATAGGTTCAAGTGATAAGGGAAATTCTTCTTTGGTTGAACCCTCTGGGTCTAGTGGCTGTTCAGGTAGCCACAATAAGCAATTAACTTGCATTGACGATTCCAAGTCTGATCAAGAAAAGATGGATCAGTTGTTTAGGGATGAAAAATTGGGACTTTTGGAATTTTCTCCGGAAGATGAATTGGAGGGGGAACTTATATATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCTTACTGATAACTTAATCTACAATGTTGCCAAGAGTTTGCCACAAGAGATTGATAAAGCACATCAGCAAAGATGGGATGCTGTGAATGTTAATCAATATCTACGTAATCTTAGGGAGGCAAAAAAGCAGGGCAGAAAGGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCAGCAACTGCTGCAGCAGCAGCATCTTCTAGGGTTTCTTCTTTCCGCAAAGACACCTTAGATGAATCTGTGCAACAGGAGAATTTGTTAAAGTCGGATACTTCAAATGGGCGGACTGGTGCATTTTCTCAGCCAATGCCACGAGCCAAAGAGACACTTTCAAAAGTAGCTGTCACAAGAGCTTCATCAGAGAAATATATGGATTTTTGCCTGCCAACCTCAGATTTTTCTAAGGAGCAACGAAAATCATGTGATATCTGCAGACGATTTGAGACTATAATAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACCTGGATTGCTATCGTATTGTGAAAGAAACAACGGGTCCATGGTACTGTGAATTATGTGAAGCTTTATCTTCTAGAAGTTCTGGGGCATCTGCTATAAATTTCTGGGAGAAGCCTTATTTTGTCGCAGAATGTGCTCTTTGTGGTGGTACTAGTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCCTTTTGTGCCGAGTGGGTTTTTGAGTCTACATTCAGAAGAGGACAAATAAATGCCATTGAAGGAATGGAGACTCTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCGCCGAAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGCCAGACTACATTCCATCCATCCTGTGCTAGAAGTGCTGGATTGTACATGAATGTGAGGACTGTTGGTGGCAAGGTGCAACACAGGGCTTATTGTGAAAAGCATAGTGTGGAGCAGAGAGCAAAGGCTGAAAGTCAAAAACATGGAATTGAAGAGCTAAGAAGTATCAAGCAAATTAGGGTTGAGCTTGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATCAAGCGGGAATTGATTCTGTGCTCACATGACATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTGGTTCATAGTCCTTTTATCCTTCCAGATGGTAGTTCTGAATCAGCTACAACATCCCTTAAAGCGAACACAGAGGGTTACAGATCATGCAATGAAGCACTCCAAAGATCAGATGACATAACTGTGGACAGCTCAGTTTCCGCTAAGCACCGTGTCAGAGTTGCTGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCACAAAGTCACTACAACCACAAGATTCCAGAGAGAATGCAATTTTCTGGCAAACAGATTCCTCATAGAGCTTCTGCTACATCACGTAATATTTCGGATGAGAGTGGATGTAGATCCAAATCTAGAAAGCATGCTGAGACATTTGGAAAGGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGTCTAACGAGGATGTATATGCCAGTGGACCAGTGGAACATGATGGGTAG 4494 0.4335 MLSFLCTLLLPAMTGGRCLSRKNMAEEEGATAEERPCLANFPAEFPDNSAAFKIDYFSQARKALSERSPFDVAEETSTSAAVTLPSGLASLLNRHADNRRRHKKSHSGGGEKKKKKSSRANEKSRASNIWVETEEYFRDLTLADIDTLFEVSSSSSLASRECFSIPLLSNAPRFNVVSTDCEDEIKRTIYENEKKRTSCEDEKKPGLNFNVASSEDEKKAGEDKKPGLNFNVASSEDEEKAGEDVKNEEGFLGIESIDNVTAERDLPQDDKDGDISDSSISLEWFLGCRNKISLTSERPSKKRKLLGEDAGLEKVLMTSPCDGNQPFCHFCGRGDTGTDRDSNRLIVCVSCKVAVHRKCYGVHDDVDESWLCSWCKLKGGVDDSVNPCVLCPKKGGALKPVNISVEGGGSAQFVHLFCCLWMPEVYIDDLKKMEPVMNVGDVKETRRRLVCNVCKVKCGACVRCSHGTCRTSFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLQENRSILPLGGSNAVGSECSEANDLLVTLPVSSEHSVKIGCGNGVLVSDSNPDKLNHNDEPPDGGLSDCRFGAHNMLECGPVPQHNIGVVGRTNENIDTSDSLSFALVLKKLIDRGKVDVEDVALEIGISPDILTANTNEAYMAPDVRHKIVNWLKAHVYTNAFQKGLKVKFKSANASKDESGATDGSDTLPISDSGLLDPVAVKSVPPRRRTISNIRILKDNKVICSSEGVTNESGVPIDKFRVGQPDCENPGSSNEASIPDATEMKVTKSEDTFHEVQGNADEPYKPSLSGCISEEKSTACLQNASMLYDQSCPAHSASQPPDSGFIKVEAISNYIHPYINKKLVQFRGGLPLEDIIGSSDKGNSSLVEPSGSSGCSGSHNKQLTCIDDSKSDQEKMDQLFRDEKLGLLEFSPEDELEGELIYFQHRLLQNAVAKKRLTDNLIYNVAKSLPQEIDKAHQQRWDAVNVNQYLRNLREAKKQGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDTLDESVQQENLLKSDTSNGRTGAFSQPMPRAKETLSKVAVTRASSEKYMDFCLPTSDFSKEQRKSCDICRRFETIINPILVCSGCKVAVHLDCYRIVKETTGPWYCELCEALSSRSSGASAINFWEKPYFVAECALCGGTSGAFRKSSDGQWVHAFCAEWVFESTFRRGQINAIEGMETLPKGVDICCICRRKHGVCMKCCYGHCQTTFHPSCARSAGLYMNVRTVGGKVQHRAYCEKHSVEQRAKAESQKHGIEELRSIKQIRVELERLRLLCERIVKREKIKRELILCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLKANTEGYRSCNEALQRSDDITVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSHYNHKIPERMQFSGKQIPHRASATSRNISDESGCRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDVYASGPVEHDG. 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02722 1497 ProSiteProfiles Zinc finger PHD-type profile. 1086 1135 IPR019787 -
Seca4g02722 1497 Pfam PHD-zinc-finger like domain 1156 1262 - -
Seca4g02722 1497 Pfam PHD-zinc-finger like domain 387 505 - -
Seca4g02722 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1078 1138 IPR013083 -
Seca4g02722 1497 SUPERFAMILY FYVE/PHD zinc finger 1083 1134 IPR011011 -
Seca4g02722 1497 ProSiteProfiles Extended PHD (ePHD) domain profile. 1154 1263 IPR034732 -
Seca4g02722 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 383 IPR013083 -
Seca4g02722 1497 PANTHER PHD FINGER PROTEINS 102 1025 - -
Seca4g02722 1497 MobiDBLite consensus disorder prediction 93 126 - -
Seca4g02722 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 508 IPR013083 -
Seca4g02722 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1154 1265 IPR013083 -
Seca4g02722 1497 ProSiteProfiles Extended PHD (ePHD) domain profile. 385 506 IPR034732 -
Seca4g02722 1497 ProSitePatterns Zinc finger PHD-type signature. 1089 1132 IPR019786 -
Seca4g02722 1497 ProSiteProfiles Zinc finger PHD-type profile. 325 378 IPR019787 -
Seca4g02722 1497 MobiDBLite consensus disorder prediction 96 113 - -
Seca4g02722 1497 CDD ePHD 1157 1262 - -
Seca4g02722 1497 MobiDBLite consensus disorder prediction 1421 1443 - -
Seca4g02722 1497 SUPERFAMILY FYVE/PHD zinc finger 318 393 IPR011011 -
Seca4g02722 1497 SMART PHD_3 1088 1133 IPR001965 -
Seca4g02722 1497 SMART PHD_3 327 376 IPR001965 -
Seca4g02722 1497 SMART PHD_3 450 506 IPR001965 -
Seca4g02722 1497 SMART PHD_3 1209 1263 IPR001965 -
Seca4g02722 1497 Pfam PHD-finger 343 376 - -
Seca4g02722 1497 Pfam PHD-finger 1100 1133 - -
Seca4g02722 1497 Coils Coil 1283 1303 - -
Seca4g02722 1497 ProSitePatterns Zinc finger PHD-type signature. 328 375 IPR019786 -
Seca4g02722 1497 MobiDBLite consensus disorder prediction 195 248 - -
Seca4g02722 1497 Coils Coil 981 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02722 Seca-Chr4 46810939 46827924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02722 338 512 C2H2 Transcription Factor Family AT3G14740 30.168 7.79e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g02722 zf-HC5HC2H_2 5.3e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02722 - - gmx:100775631 2206.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02722 4 46810939 46827924 Seca4g02722 4 46810939 46827924 ECH