Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02707 ATGGGGGAGGTCGTGACAAGTGCTGAGAGGCTAACGGGAGCGGAGGAGGAGATAGTGGAGATGGAGAAGGAAGAGGGAGGGAGTGGAACTGGGAGCAGAGGTGAATTGAAAGGGTTGATGAGATGGGAGAAGTTCTTGCCGAGGATGATTTTGAGAGTGCTCTTGGTTGAAGCCGATGACTCCACCAGGCAGATTATAGCAGCGCTTCTCAGGAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGATTGAAGGCATGGGAAATACTAAAGGGAAGACCACGCAATATCGATCTAATACTGACAGAAGTGGATTTGCCATCCATATCTGGATATGCACTTCTCACGTTAATTATGGAGCATGAGATTTGCAAAAACATCCCTGTCATAATGATGTCCTCACATGATTCAATTAGCACGGTATACAAATGCATGTTGAGAGGTGCCGCAGACTATCTTGTTAAGCCCATTAGAAGAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCATCAACTGCCGGTGTAAATGGCCCTCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCTGAAAACAATGCTGCCAGTAATCGTTCAAGTGGCGATGCTACTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCGCAGAGCTCTTGTACAAAGCCTGACATGGAAGCTGAGAGTGGCCCTACTGATAACATGCAAGAATTTTCTCTACTAAAAGGTGTTCAGGCATATCCAAGTGGAACAAAGACTCAAGAGGTCGAAATCCGTTTAGGCCAGACATCGATCATTCATGATGGTCATGTTGGAGGATCAACTGTGGCTATCTGCAATAATGGTGAGACAAGCATTGCTACCGGCAAGGATGGTGATGCAGAAAATTTTCGAAGTTCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCAATCTGCAGTCTACAAAATTCCACAGTTGATTGCACAGGCAAGTTTGAATTTTCTCCACAATTGGATCTTTCCCTGAGAAGATCTCATCCAAGCAACTTTGAGAAGGAACTCACTGAAGAAAGGCACACCCTCATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGAAATTGCAAGCCCCACCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGAGAACAGAAAACAAATTGTGAGAAAATTGTCTCCCATGTAGCAGCTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGCATTATGTCTCCAGCTACACCCCAATCAAAAGAATCTGAACTTGCAACTTCACACTCACAGCAAGGGCATTCTCTCCCAATTCCTGTAAAAGGTGTAAGGTTCAATGATTTATGTGCAGCCTATGGTTCTGTACTTCCTCCAGTCTTTCGTACACAGTCAGGTCCACCATCAATGCCAAGTCCAAGTTCAGTTATGTTCCTTGAACCAAACTTTCAAGTCAATGCATTCTATCAGTCAAATATCAAAGAAAATAGTACAGAACAGCTTTATGAACCTCATGGCACAAATGGAAACACCACCCCAAACCACATTGTGTACAGACATGAGCACAAGTCAGAACATGCAGAGGATCGAGGACATATCTCTTCTGCAACTGATCAAAGTGTATCCAGCAGTTTCTGTAATGGAAATGCAAGCCATCTTAACAGCATGGGTTATGGAAGCAATTGTGGAAGTAGCAGCAATGTTGATCAAGTTGCTGCTACTGTCAGGCCAGCCTCAGATGGTAAGAATGAAGACCCCACAAACAATGGATATTCTCATCGGTCAATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGCTATGAGAAGAAGGTTAGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTTCGTCAAGTGCATCCTGATCCTCTTTCTGCAGAAAAAGATGATCAGTAG 2058 0.4344 MGEVVTSAERLTGAEEEIVEMEKEEGGSGTGSRGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPRNIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSHDSISTVYKCMLRGAADYLVKPIRRNELRNLWQHVWRRQSSTAGVNGPQDESVAQQKVEATAENNAASNRSSGDATCIQRNKELIEKGSDAQSSCTKPDMEAESGPTDNMQEFSLLKGVQAYPSGTKTQEVEIRLGQTSIIHDGHVGGSTVAICNNGETSIATGKDGDAENFRSSSISGEAHDNHYVQINSSKEAIDLIGAFHTHPICSLQNSTVDCTGKFEFSPQLDLSLRRSHPSNFEKELTEERHTLMHSNASAFKRYTNRKLQAPPAVLINFSDQQREQKTNCEKIVSHVAAGCNSDSSTPSMQRCIMSPATPQSKESELATSHSQQGHSLPIPVKGVRFNDLCAAYGSVLPPVFRTQSGPPSMPSPSSVMFLEPNFQVNAFYQSNIKENSTEQLYEPHGTNGNTTPNHIVYRHEHKSEHAEDRGHISSATDQSVSSSFCNGNASHLNSMGYGSNCGSSSNVDQVAATVRPASDGKNEDPTNNGYSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLSAEKDDQ. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02707 685 CDD psREC_PRR 53 156 - -
Seca4g02707 685 Pfam CCT motif 630 672 IPR010402 GO:0005515
Seca4g02707 685 SMART REC_2 51 166 IPR001789 GO:0000160
Seca4g02707 685 ProSiteProfiles Response regulatory domain profile. 52 170 IPR001789 GO:0000160
Seca4g02707 685 ProSiteProfiles CCT domain profile. 630 672 IPR010402 GO:0005515
Seca4g02707 685 Coils Coil 4 24 - -
Seca4g02707 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 52 235 IPR045279 GO:0009736
Seca4g02707 685 MobiDBLite consensus disorder prediction 652 669 - -
Seca4g02707 685 MobiDBLite consensus disorder prediction 439 467 - -
Seca4g02707 685 MobiDBLite consensus disorder prediction 607 626 - -
Seca4g02707 685 Gene3D - 49 265 - -
Seca4g02707 685 MobiDBLite consensus disorder prediction 174 241 - -
Seca4g02707 685 Pfam Response regulator receiver domain 53 164 IPR001789 GO:0000160
Seca4g02707 685 MobiDBLite consensus disorder prediction 174 212 - -
Seca4g02707 685 MobiDBLite consensus disorder prediction 652 685 - -
Seca4g02707 685 SUPERFAMILY CheY-like 51 176 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02707 Seca-Chr4 46458222 46462864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02707 25 674 Response Regulator Gene Family AT5G24470 40.841 8.70e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca4g02707 Response_reg 1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02707 K12130 - gmx:100777119 1080.47