Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02705 ATGTTTTGTTTTGTTTCAGCGAAGCTCGTTTCTTTTTTTCAAGAATTAGGGATTGGTTTTGAGGAAACAAAAGTGCTCTTTCTCAATAACCCTGACCTTAGTTTAGTTTCAGTAGATTCATTGCATGCTAGGGTCCTTTCTTTACAGTCTTTGGGGTTGGATAGGGTTGCCATGTATCAATTGGTTACAAAGCGCCCAACTGTGCTAACAGATAAGAAAATTGTTCCCTTGTTAAGCTTTTTGAGAAATGAACTAGAAGGACAGCTTGAGCAAGCACAGATAGAGCGTCTTTTATCTCTTGAACCAAAATTCTTGGTGGATTTTCCTCAGAAGGTTAAACTGCTTGTTGAAAGAGGTGTTCCTGCTGATAAGATTGTCCATGTGCTCAACAAAGTTCATTTACAGAAGGCACTGTGTGGCAAGTCCATGGATGAAATTGACAGATTTATAACTTTCTTGGAACCCTTTGGTAGCATTAGTTTGATCCTGAGGCTCCCTACAATTCTCAAATTTGATTTAGATAAGCAGCTCATTCCAAGAATCAAAGTACTGGTGGAACTTAGTAATGGAGATAAGTTTGGTGTTGCCAAAGTGCTCCTTAGATACCCTGCAATCTTGAACTATACTGTGAAACATGTGGAGGGACATTTACAGTTCTTGAGGTCTTTTGCAAATCTTGATGACAAACAAATATTTAGAATAATGTCAATATTTCCAGCTGTTGTCACTATTAGCAGAGAGAGGAAACTGCGTCCTAGAATACAATTTCTCATGGAATGTGGGTTAGATTCAGATGATATTTTCAAGTTCTTGATTAAAGCACCCTTATTTCTAGGTCATTCATTCCATGACAACATTGTCTATAAGCTTGTGTTTCTTGTCAAAATTGGATATAAATATAAGACAAAAGACTTGGCAATGGCAATTGGTATTTCTACTAGGACAAGCTGTGAGAACATGCAAAAGGTGATAAGTCTATTCTTGAATTATGGGTTTTCATGTGAAGACATTATTGCTATGAGTAAGAAGCAGCCACAGATACTGCAGTATAATCATACTTCTTTAGAGACCAAGATGAACTACTTGATAGAGGACATGGATCGGGACATTAAGGAGTTATTGGTTTTTCCTGCATTTCTTGGCTACAAGTTGGATGACAGAATTAAGCCTAGATATGAGATAAGGAAGAGTACAAAGGGGGGACAAATGTCTCTCAATAAGCTTCTAACTGTTTCAAGTGAGATGTTTACTGACAAGAGAAAAAAGGCCTCTGCTCTAGCATCTGAATTGTGA 1293 0.3751 MFCFVSAKLVSFFQELGIGFEETKVLFLNNPDLSLVSVDSLHARVLSLQSLGLDRVAMYQLVTKRPTVLTDKKIVPLLSFLRNELEGQLEQAQIERLLSLEPKFLVDFPQKVKLLVERGVPADKIVHVLNKVHLQKALCGKSMDEIDRFITFLEPFGSISLILRLPTILKFDLDKQLIPRIKVLVELSNGDKFGVAKVLLRYPAILNYTVKHVEGHLQFLRSFANLDDKQIFRIMSIFPAVVTISRERKLRPRIQFLMECGLDSDDIFKFLIKAPLFLGHSFHDNIVYKLVFLVKIGYKYKTKDLAMAIGISTRTSCENMQKVISLFLNYGFSCEDIIAMSKKQPQILQYNHTSLETKMNYLIEDMDRDIKELLVFPAFLGYKLDDRIKPRYEIRKSTKGGQMSLNKLLTVSSEMFTDKRKKASALASEL. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02705 430 PANTHER CGI-12 PROTEIN-RELATED 10 142 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 Gene3D Transcription termination factor 3, mitochondrial 6 194 IPR038538 -
Seca4g02705 430 Gene3D Transcription termination factor 3, mitochondrial 196 426 IPR038538 -
Seca4g02705 430 Pfam mTERF 315 416 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 Pfam mTERF 11 295 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 370 402 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 24 54 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 59 88 IPR003690 GO:0003690|GO:0006355
Seca4g02705 430 SMART mt_12 196 227 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02705 Seca-Chr4 46396920 46400744 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g02705 mTERF 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02705 - - pvu:PHAVU_009G045200g 565.459