Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02690 ATGATGAATGAGAGCAGTGTGAGGCTACTACCACTGGAGATAGTAGCTGAAATACTCTCATGGTTACCGGTTGAGTCTATTCTACGCTTCAGCTGCGTTTGCAAGTCATGGTACTCACTCATCTCACACTCTCAATTCATCAACCTTCATCTTTCTCGCTCCCTCAAACTCAACCATGGCATGCTTATCTTTGAACAACCCCGTTACGAGCATGGAATGCTCCGTTTGGCACCCTTTTCTGGTGATGCCATTTCGACATACCCCTTGAGGATTCCCCTTCCCTTTCGAGAGGATCGTGTTCGCATGTGTCATTGCGATGGCTTGGTTTTCTTCACTGCAGCTTGGGCCAATGTCTGTGTGCTCTGGAACCCTTTACTGCGGAAGCAAAAGTCGTTGACTTTGCCGCGATTCGAGGGTCCTGGATTTCCGGGTAGTGTGATTTTGGTGGATTTTGGATTTGGGGTTGACATGGTAAGTGGTGACCATAAGATTGTTAGGCTTGTGCTTTATGCTGAATGGTATAAGGGTGATTATTTGAAGCATAATTTTTGGACTTCTGAAGTAAAGGTTTATTCTTTTGGTACAAATTCATGGAGAAGGGTTCCTGATTTGCCTTTCAATGATTTAAAGCTTTGTACTCCTTCAATCCATGTTAATGGTGCTCTACACTGGTTGGTTTGTGACAGGGATTCAAGTGAGTCTATCAGATTTGTTGTTGCTTTTGATCTTGCAAATGAAGAATTTCATAACCTTCTTGTTCCAAGTAATTTGGAACATGGGTCTCTCTCGAGTTTGGCTGTTCTGGATGGCTGTCTCTGCTTATGCCTGAATGATAATGCAAAGGCTCGTCAAGAGGTTTGGTTGATGAAGGAGTATGGAGTGCATGATTCTTGGTGTAGGCTTTTGGTTTTTGAAAATTGTGAATTGCCTTGCAGGCCATTAGTTTTATCCAAGGCTAATGCCAAGGTGCTTGTGGAACAGGACTCTAAGAAACTATTTTGGTATGATTACATCAATGAGGAAATTGAAAAGGTCATGATTAGTGATATGCCTTTTGCCTTTCAAACAACTGTCTCTGCTGGAAGCCTTCTTTTGCATGATGGAGATGCTGTAAAGGCTGCTCAATTATAG 1131 0.4279 MMNESSVRLLPLEIVAEILSWLPVESILRFSCVCKSWYSLISHSQFINLHLSRSLKLNHGMLIFEQPRYEHGMLRLAPFSGDAISTYPLRIPLPFREDRVRMCHCDGLVFFTAAWANVCVLWNPLLRKQKSLTLPRFEGPGFPGSVILVDFGFGVDMVSGDHKIVRLVLYAEWYKGDYLKHNFWTSEVKVYSFGTNSWRRVPDLPFNDLKLCTPSIHVNGALHWLVCDRDSSESIRFVVAFDLANEEFHNLLVPSNLEHGSLSSLAVLDGCLCLCLNDNAKARQEVWLMKEYGVHDSWCRLLVFENCELPCRPLVLSKANAKVLVEQDSKKLFWYDYINEEIEKVMISDMPFAFQTTVSAGSLLLHDGDAVKAAQL. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02690 376 PANTHER OS09G0372900 PROTEIN-RELATED 10 322 - -
Seca4g02690 376 Pfam F-box associated 216 341 IPR006527 -
Seca4g02690 376 ProSiteProfiles F-box domain profile. 4 49 IPR001810 GO:0005515
Seca4g02690 376 NCBIfam F-box protein interaction domain 102 328 IPR017451 -
Seca4g02690 376 Pfam F-box domain 10 43 IPR001810 GO:0005515
Seca4g02690 376 Gene3D - 1 46 - -
Seca4g02690 376 SUPERFAMILY F-box domain 6 56 IPR036047 GO:0005515
Seca4g02690 376 CDD F-box_AtFBW1-like 8 46 - -
Seca4g02690 376 SMART fbox_2 10 50 IPR001810 GO:0005515
Seca4g02690 376 SUPERFAMILY Galactose oxidase, central domain 101 351 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02690 Seca-Chr4 46284317 46285447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02690 169 305 Carbohydrate Esterase AT1G25141 20.134 2.36e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02690 - - cave:132178594 216.468