Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02684 ATGAGTGGTCGATTTTCTCGCACAATTTATGTTGGCAACCTGCCGTCTGATATAAGAGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCTCCTCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGGGGTCGGGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGGTATGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCAGTGGCCGTTTTGGCATCTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCGTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGACGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGTACACCTTCATTTTGGTTTGCGTTTTGCTATGCCTTTATTAGATTGTTACCATTTACTATATTTACATTAGAGTAG 540 0.4556 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTPSFWFAFCYAFIRLLPFTIFTLE. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02684 179 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 156 - -
Seca4g02684 179 FunFam serine/arginine-rich splicing factor SR34A-like 2 117 - -
Seca4g02684 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Seca4g02684 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 164 IPR000504 GO:0003723
Seca4g02684 179 CDD RRM1_SF2_plant_like 8 79 - -
Seca4g02684 179 Gene3D - 2 115 IPR012677 -
Seca4g02684 179 MobiDBLite consensus disorder prediction 81 106 - -
Seca4g02684 179 Gene3D - 117 170 IPR012677 -
Seca4g02684 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Seca4g02684 179 SMART rrm1_1 119 179 IPR000504 GO:0003723
Seca4g02684 179 SMART rrm1_1 8 78 IPR000504 GO:0003723
Seca4g02684 179 SUPERFAMILY RNA-binding domain, RBD 6 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02684 Seca-Chr4 46227469 46232332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02684 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 2.01e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02684 K12890 - gmx:100786491 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02684 4 46227469 46232332 Seca4g02684 4 46227469 46232332 ECH