Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02680 ATGGCGGTTGCTGAGAATGCTGGGGCCAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCTTCGGACTCAAGTGAGGTGGAGAAATCGAAACCCAGAAGCGATCAGAATCTGAACAACGGTGTGTTCAACCACCAACACCAAGATAGAGTTCCGAACACTATGTCAGTTCCCAATGGTAATTATAACTACAAGGCTCAAATGGGTCAGATGCACGCAAATGGGGTCCAGAACCAGCAGTTGGTGGTGAAGAACAATGATGGATATGGGATTGATGGGGTAAGAAATGGGGAGAATGATGGGGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAACTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACAAACAACCATGGCTACTTAACTGGACCTGCTGCTGGGTTTGGCTACCCTAACAATTTTATACTACTCAATAATTATGGTAATGCTAACGCCCAAACTAACAGAAGGAGGAAGAATGGCTATAATCATGGGAAGCGTAGAGCGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTAGAAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTTGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGACTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCATTGAGAGTCCTACCTTCAAAAACTGCCATTGCACCTGTTAACCCAACATTTTTACCCAGGTCTGAAGATGAAAGAGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGGTAGTTTAG 921 0.4365 MAVAENAGAKIGSSSQNLDNSVVSSDSSEVEKSKPRSDQNLNNGVFNHQHQDRVPNTMSVPNGNYNYKAQMGQMHANGVQNQQLVVKNNDGYGIDGVRNGENDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLTGPAAGFGYPNNFILLNNYGNANAQTNRRRKNGYNHGKRRANHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVV. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02680 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 262 IPR000504 GO:0003723
Seca4g02680 306 Gene3D - 158 274 IPR012677 -
Seca4g02680 306 MobiDBLite consensus disorder prediction 9 28 - -
Seca4g02680 306 SMART rrm1_1 198 268 IPR000504 GO:0003723
Seca4g02680 306 FunFam Polyadenylate-binding protein-interacting protein 11 161 274 - -
Seca4g02680 306 Pfam Ataxin-2 C-terminal region 119 133 IPR009818 -
Seca4g02680 306 MobiDBLite consensus disorder prediction 37 57 - -
Seca4g02680 306 SUPERFAMILY RNA-binding domain, RBD 168 274 IPR035979 GO:0003676
Seca4g02680 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 272 IPR000504 GO:0003723
Seca4g02680 306 CDD RRM1_CID8_like 195 274 IPR034823 -
Seca4g02680 306 MobiDBLite consensus disorder prediction 1 57 - -
Seca4g02680 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 117 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02680 Seca-Chr4 46139189 46143962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02680 199 267 Eukaryotic Initiation Factors Gene Family AT2G23350 35.211 3.04e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02680 - - gmx:106794116 504.597