Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02673 ATGACCCACATTCGACTTATTTTTCTCCTATGTTTCCTACTTTATCATTTTCATGGCATCACATGCAACAACAAAACAGATAGAGATGCCCTTCTTTCTTTCAAATCCCAAGTGACTGACCCAAACAATGCTCTATCCACTTGGTTAGTACATTCCAATCACTGCACCTGGTATGGTGTCACCTGTTCTAAAGTTGGAAACAGAGTCCAATCTCTAAACCTACCAGGACTTGGTCTCTCTGGTAAATTACCCTCTAACCTCTCCAACCTCACTTACCTTCATTCACTTGACCTTTCCAACAACACATTTCATGGACGAATTCCCCCACAGTTTGGCCATCTCTCACTTCTTAATCTCATTAACTTAGCTTACAACAATCTCAGTAGCACACTTCCAAAGAAGTTGGGCCATCTGCATCGCCTTCAAAGTCTAGACTTTTCTGTCAACAATCTCACAGGTAAAATCCCTCCAACATTTGGCAATCTCTTGTCTCTTAAGTATCTTGCATTGGCAGGGAACAAATTTTTGGGTGAGATTCCAAGTGAATTAGGCAATCTAAGCAATCTTTCCCATTTTCAACTCTCAGTAAACTATTTCACTGGCGAGTTTCCCACTTCTATCTTCAACATCTCTTCTTTAGTCTTCTTATCAGTGACACAAAACAATCTATCAGGCAAATTGCCACAAAATTTGGGCCTTGCCCTTCCAAATCTACAGACTCTAGCTCTGGCAACCAATAGGTTTGAAGGGGTCATTCCTAGTTCCATATCCAATGCCTCACATCTTCAATATATAGATTTTGCAAACAATGAGTTCCATGGGTCTATACCTCTCTTCAACAACTTGAAAAATCTTACCCACCTTACTCTTGGGAATAACTCTTTCTCTTCCACGACCTCACTGAATTATAAGTTCTTTGATTCCCTTAGAAACTCTAGTCAGTTGCAAATGCTCATCATCAATGATAACTATTTGACTGGGGAACTTCCAAGTTCTGTTGCCAATCTGTCTACCAATCTCCAACATTTCTGTGTTGCTGATAATTGGCTAACTGGACGCATTCCTCGAGGGATAGAGAAAATTAAAAATCTCATATCCTTGTCTTTAGAGAACAATGATTTCACTGGAGAGTTACCATCAGAAATTGGAGCTCTAAATAACCTGCAGCAGCTTGTGATATACAAAAATAGATTGTCTGGGGAAATTCCAGACATTTTTGGCAATTTAACAAATCTGTATAGTCTTGCAATGGGATATAACCAATTCTCAGGTGTGATTCATAGAAGCATTGGAGAATGCAAGAGATTGAGTTTTCTTAACCTGGGAATGAATAGGCTTGGTGGGACCATACCACAGGAGATTTTTCAGCTTTCTGGCTTAACAACCTTATACTTACAAGGTAACTCTCTACATGGCTCGCTTCCTCCCGAGATCAACACCATGGAGCAGCTTGAAACCATGAATATTTCCGACAACCAGTTGTCAGGGTTCATACCTAAGGAAATAGATGGTTGTTCTAGCTTGAAGACACTTGTGATGGCAAGAAACAAATTCAGTGGCACAATCCCAAAGAGTCTGGGGGATTTAGCATCCCTTGAGACTTTGGATCTATCATCAAACAATCTCTCTGGCCCAATTCCTGAAAGTTTTGAAAAGTATGAGTATATGGTGATGTTAAATTTGTCTTTCAACCATTTGGAAGGGGCGGTTCCTATGAAAGGTGTTTTTCTGAACCTTAGCCGGGTTGATCTCAGAGGTAACAACAAACTATGTGGCCTTACCAGTGATATTGTGCAGAAATTGGGAGTCTTTCTCTGTGTTGCAGGTAAAAAGAAGAGAAACATTTTACTCCCTATCATGCTAGCAGTTACAGGTGCAACTGCTTTGTTCATTTCAATGTTCTGTCTACTATGGGTGCTAATGTCCCGAAAGAGGAAATGCAATAAACAGGGGGAAACTAATTTGTCATGTGCTCCTTTTAAGGGGTTACCTCAAAATATATCATATGGAGATATTCGGCTTGCAACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTTTGGCTCTGTTTATAAGGGTCTGTTCAGCTTCAGCATCAACACTGGTGAAACCACCACCCTTGCTGTTAAGGTCCTGGACTTAGAGCAAAGCAAAGCTTCTAAGAGTTTTAATGCTGAATGTGAAGCTTTAAGAAATGTCAGGCACCGGAACCTAGTGAAGGTTATCACTTCTTGCTGCAGTGTTGATTATAAGGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGCCCAATGGTAATTTGGACATGAGTTTATACCCCAATGATGAAGAGTCAGGATCCTCTCTAACTTTGCTGCAGAGATTAAACATTGCTATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGACTGTGACCCACCAATAGTCCATTGTGATCTGAAACCAGTCAATGTCCTGCTAGATGAAGATATGGTTGCACATGTTGCAGATTTTGGATTGGCCAGGTTTCTGTCTCAAAATCAATCAGAGCAACAAAGTAGCACTATGGGACTGAAAGGATCAATAGGCTATATTGCCCCAGAATATGGTCTAGGCGTTAAGGCTTCCACTGAAGGTGATGTCTACAGTTTTGGGATTCTACTCCTGGAGATGTTCATAGCCAAGAAACCAACGGATGAAATGTTCAAAGAAGGATTGAGCCTGAACAAATTTATCTCAGTCATGGATGAGAATCAAGTATTGGAGGTTGCAGATCCAAGGCTCATTAAGGAATATGATGAATATTGGAAACAAAGCTTCAGCACTGATTATCATAGCAGCAGTGAGGATAACACACATTGGAGGCCCAAAGCTGAGGAGTGCATAGCTGCAGTGATAAGAGTAGGCTTGTCTTGTACAGCTTATCTTCCCAAAGATAGATGGACCATGACAGAGGCCTCAACGAAATTGCAACGAATCAGGCAGTCTATGTTGGGATTGTGA 2997 0.4084 MTHIRLIFLLCFLLYHFHGITCNNKTDRDALLSFKSQVTDPNNALSTWLVHSNHCTWYGVTCSKVGNRVQSLNLPGLGLSGKLPSNLSNLTYLHSLDLSNNTFHGRIPPQFGHLSLLNLINLAYNNLSSTLPKKLGHLHRLQSLDFSVNNLTGKIPPTFGNLLSLKYLALAGNKFLGEIPSELGNLSNLSHFQLSVNYFTGEFPTSIFNISSLVFLSVTQNNLSGKLPQNLGLALPNLQTLALATNRFEGVIPSSISNASHLQYIDFANNEFHGSIPLFNNLKNLTHLTLGNNSFSSTTSLNYKFFDSLRNSSQLQMLIINDNYLTGELPSSVANLSTNLQHFCVADNWLTGRIPRGIEKIKNLISLSLENNDFTGELPSEIGALNNLQQLVIYKNRLSGEIPDIFGNLTNLYSLAMGYNQFSGVIHRSIGECKRLSFLNLGMNRLGGTIPQEIFQLSGLTTLYLQGNSLHGSLPPEINTMEQLETMNISDNQLSGFIPKEIDGCSSLKTLVMARNKFSGTIPKSLGDLASLETLDLSSNNLSGPIPESFEKYEYMVMLNLSFNHLEGAVPMKGVFLNLSRVDLRGNNKLCGLTSDIVQKLGVFLCVAGKKKRNILLPIMLAVTGATALFISMFCLLWVLMSRKRKCNKQGETNLSCAPFKGLPQNISYGDIRLATNNFAAENLIGKGGFGSVYKGLFSFSINTGETTTLAVKVLDLEQSKASKSFNAECEALRNVRHRNLVKVITSCCSVDYKGDDFKALVMQFMPNGNLDMSLYPNDEESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDEDMVAHVADFGLARFLSQNQSEQQSSTMGLKGSIGYIAPEYGLGVKASTEGDVYSFGILLLEMFIAKKPTDEMFKEGLSLNKFISVMDENQVLEVADPRLIKEYDEYWKQSFSTDYHSSSEDNTHWRPKAEECIAAVIRVGLSCTAYLPKDRWTMTEASTKLQRIRQSMLGL. 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02673 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Seca4g02673 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 183 - -
Seca4g02673 998 ProSiteProfiles Protein kinase domain profile. 679 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02673 998 Gene3D Ribonuclease Inhibitor 178 278 IPR032675 -
Seca4g02673 998 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Seca4g02673 998 SUPERFAMILY Protein kinase-like (PK-like) 659 987 IPR011009 -
Seca4g02673 998 Gene3D Ribonuclease Inhibitor 279 600 IPR032675 -
Seca4g02673 998 ProSiteProfiles Leucine-rich repeat profile. 531 552 IPR001611 GO:0005515
Seca4g02673 998 PANTHER LEUCINE RICH REPEAT KINASE 2 308 993 - -
Seca4g02673 998 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Seca4g02673 998 Gene3D Transferase(Phosphotransferase) domain 1 766 996 - -
Seca4g02673 998 SMART serkin_6 679 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02673 998 Pfam Protein tyrosine and serine/threonine kinase 682 913 IPR001245 GO:0004672|GO:0006468
Seca4g02673 998 SMART LRR_typ_2 529 552 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 282 308 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 162 186 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 114 138 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 409 433 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 361 385 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 90 113 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 457 481 IPR003591 -
Seca4g02673 998 SMART LRR_typ_2 235 258 IPR003591 -
Seca4g02673 998 Pfam Leucine rich repeat 236 294 IPR001611 GO:0005515
Seca4g02673 998 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Seca4g02673 998 SUPERFAMILY L domain-like 51 230 - -
Seca4g02673 998 Gene3D Phosphorylase Kinase; domain 1 661 765 - -
Seca4g02673 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 651 765 - -
Seca4g02673 998 Gene3D Ribonuclease Inhibitor 23 177 IPR032675 -
Seca4g02673 998 SUPERFAMILY RNI-like 193 566 - -
Seca4g02673 998 ProSitePatterns Protein kinases ATP-binding region signature. 685 713 IPR017441 GO:0005524
Seca4g02673 998 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 766 997 - -
Seca4g02673 998 FunFam Leucine-rich repeat receptor protein kinase EMS1 203 301 - -
Seca4g02673 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 302 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02673 Seca-Chr4 45998412 46001518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02673 13 993 Receptor kinase-like Gene Family AT3G47570 41.021 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g02673 PK_Tyr_Ser-Thr 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02673 - - gmx:100776054 1442.17