Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02672 ATGATCCACATTAGACTTATTTTGCTCTTATGTTTCTTACTTCATTATTTTCGTGGCATCCTATGCAACAACAACACAGATAAAGATATCCTTCTTTCTTTCAAATTCCAAGTGACTGACCCAAATAATGCTCTCTCTGGATGGTTAACAGATTCCAATCACTGCAACTGGTACGGTGTCACCTGTTCCAATCTTGGAAACAGAGTCCAATCTCTCAACCTATCACGACTTGGCCTCTCTGGTAAACTACCCTCTCAACTCTCCAACCTCACTTACCTTCATTCGCTTGACCTTTCCAAGAACAAATTTCATGGCCAAATTCCCTTCGAGTTTGGCCATCTCTCTCTTCTTAATCTCATTAAATTAGCTTTCAACAATCTCAGTGGCACACTTGCCCTAGCAACCAATAGGTTTGAAGGGGTCATTCCTAGTTCCATTTCCAATGCCTCAAACCTTCAAAAAATTGATCTTACTAACAATAATTTCCATGGCTCCATACCTCTATTCAACAACTTGAAAAATCTTACTCACCTTATTCTTGGTAATAATTATCTCTCTTCCACAAATTCATTGAATTATAAGTTCTTTGATTCCCTTAGAAACTCCACTCAGTTGCAAATTCTCATGATCAATGATAACAATTTGACTGGATATAACCAGTTCTCAGGTAGAATTCACACAAGTATTGGAAATTGCAAGAGATTGAGTTTACTTCACCTGGGAATGAATAGGTTTAGTGGAACCATACCAGAGGAGATTTTTCAGCTTTCTAGCTTAACAACCTTGTACTTAACAGGAAACTCTCTGCATGGTTCACTTCCTCCTGGTGTCAATAACATGGAGCAGCTTGAGACCATGGATATTTCCGACAACCAGCTGTCAGGGTACATTCCTAAGGAAATAGATGGTTGTTCTAGCTTGAAGTCACTTGTGATGGCAAGAAACAAATTTAGTGGCTCAATCCCAAATAGTCTAGGGGATATAGCATCCCTTGAGACTTTAGACCTATCATCAAACAATCTCACTGGCCCAATTCCTCAAAGTTTAGAAAAGCTTCAGTATATGGTGATGTTAAATTTGTCTTTCAACCATTTGGAAGGGGTGGTTCCTATGAAAGGTGTTTTTATGAACCTTAGCCGGGTTGATCTTAGAGGTAATAGCAAACTCTGTGGCCTTAACAATGAAATTGTGCAAAAGTTGGGAGTCTCCCTCTGTGTTGTTGCTAAGAAAAAGAGAAATATTTTACTTCCTATCATATTAGCAATAATTACAGTCCTCTACCGAATGTGGGTTCTGATGTCTCGAAAGAAGGAATACAAGCACAGGAAAACAAGTTTGTCATCTGCTCCTCTAATGGGGTTGCCTCAAAATATAACGTATGCTGATATTCGGTTTGCAACAAACAATTTTTCAGCTGAAAACTTGATAGGAAAAGGAGGCTTTGGCTCTGTTTATAAGGGTCTGTTTAGCATGAGCACTGTTGAAACCACTACCCTTGCTATCAAAGTCTTGGACAAGCAACAAAGCAAAGCTTCTCAGAGTTTCAATATAGAATGTGAAGCTTTAAGAAATGTTAGGCATCGGAACCTAGTGAAGGTTATTACTTCTTGCTCCAGCGTTGATTATAAAGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGGCCAATGGTAATTTGGACATGAGTTTATATCCCAATGATGAAGAGTCAGGATCCTCTCTAACCTTGCTGCAAAGATTAAACATTGCCATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGACTGTGACCCACCAATAGTCCATTGTGATCTGAAGCCTGTCAATGTGCTACTAGATGATGATATGGTTGCACATGTTGCAGATTTTGGATTGGCAAGGTTTCTTTCTCAAAATCCATCAGAGCAACAAAGTAGCACTATGGGACTGAAAGGATCAATAGGCTATATTGCCCCAGGTACAAAATTTATCTTTTTTACCTTCAATTTATACATAACTGATGTGTCTAGTGACAACAGCTATAATAATAGTAAGGCACATTGGAAGCCCAAAGCTGAGGAGTGCATAGCTGCTGTGATAAGAGTTGGCTTGTGTTGTACACCTCATCATCCTAAAGATCGATGGACCATGAGAGAGGCCTCAACAAAATTACAAGGAATTAGGCAATCTATGTTTGGCTTGTGA 2190 0.3922 MIHIRLILLLCFLLHYFRGILCNNNTDKDILLSFKFQVTDPNNALSGWLTDSNHCNWYGVTCSNLGNRVQSLNLSRLGLSGKLPSQLSNLTYLHSLDLSKNKFHGQIPFEFGHLSLLNLIKLAFNNLSGTLALATNRFEGVIPSSISNASNLQKIDLTNNNFHGSIPLFNNLKNLTHLILGNNYLSSTNSLNYKFFDSLRNSTQLQILMINDNNLTGYNQFSGRIHTSIGNCKRLSLLHLGMNRFSGTIPEEIFQLSSLTTLYLTGNSLHGSLPPGVNNMEQLETMDISDNQLSGYIPKEIDGCSSLKSLVMARNKFSGSIPNSLGDIASLETLDLSSNNLTGPIPQSLEKLQYMVMLNLSFNHLEGVVPMKGVFMNLSRVDLRGNSKLCGLNNEIVQKLGVSLCVVAKKKRNILLPIILAIITVLYRMWVLMSRKKEYKHRKTSLSSAPLMGLPQNITYADIRFATNNFSAENLIGKGGFGSVYKGLFSMSTVETTTLAIKVLDKQQSKASQSFNIECEALRNVRHRNLVKVITSCSSVDYKGDDFKALVMQFMANGNLDMSLYPNDEESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDDDMVAHVADFGLARFLSQNPSEQQSSTMGLKGSIGYIAPGTKFIFFTFNLYITDVSSDNSYNNSKAHWKPKAEECIAAVIRVGLCCTPHHPKDRWTMREASTKLQGIRQSMFGL. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02672 729 Pfam Protein tyrosine and serine/threonine kinase 473 654 IPR001245 GO:0004672|GO:0006468
Seca4g02672 729 SMART serkin_6 470 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02672 729 ProSiteProfiles Leucine-rich repeat profile. 330 353 IPR001611 GO:0005515
Seca4g02672 729 FunFam LRR receptor-like serine/threonine-protein kinase EFR 441 554 - -
Seca4g02672 729 ProSitePatterns Protein kinases ATP-binding region signature. 476 502 IPR017441 GO:0005524
Seca4g02672 729 PRINTS Leucine-rich repeat signature 328 341 - -
Seca4g02672 729 PRINTS Leucine-rich repeat signature 283 296 - -
Seca4g02672 729 SUPERFAMILY L domain-like 51 394 - -
Seca4g02672 729 FunFam Leucine-rich repeat receptor-like kinase 27 132 - -
Seca4g02672 729 Gene3D Ribonuclease Inhibitor 133 400 IPR032675 -
Seca4g02672 729 Pfam Leucine Rich Repeat 330 352 IPR001611 GO:0005515
Seca4g02672 729 Gene3D Ribonuclease Inhibitor 26 132 IPR032675 -
Seca4g02672 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Seca4g02672 729 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca4g02672 729 Gene3D Transferase(Phosphotransferase) domain 1 555 656 - -
Seca4g02672 729 SUPERFAMILY Protein kinase-like (PK-like) 445 718 IPR011009 -
Seca4g02672 729 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 189 399 - -
Seca4g02672 729 Gene3D Phosphorylase Kinase; domain 1 454 554 - -
Seca4g02672 729 ProSiteProfiles Protein kinase domain profile. 470 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02672 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 67 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02672 Seca-Chr4 45978865 45981350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02672 71 727 Receptor kinase-like Gene Family AT3G47570 36.436 2.21e-129 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g02672 PK_Tyr_Ser-Thr 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02672 - - gmx:100776054 755.747