Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02668 ATGAGGGGTGATTTTGGCGTTTCAGACAAGGAACCTAATATAAAAAAAAGCACCAGTGTTGTTGGTTTGGGTGTGAAGAGCCTTGAAGCATTCCCTAATAAGATGACCATGATGGTGCATCATAATCATCACCACCGTTCATTCTCATCACCCTTTGATAATGATTCCTCTGCTGGTGATGCTGATGGTCCCACTACCTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGATGTTCCTGCTCTTGGTGCTGCCATTGATGGTGGCGGTGCTGCTTCTTCTGCTCTAATAAGACCTTTGCAGCCTTTTGACATTTCTTCTGCTTATACTCCTGCAGCTACCACTACCTTCAAATCCCCAGCAGGTGGAATGGCGGCTTTGGGGTTTCCTTTCACAAGTGCACAATGGAAGGAGCTTCAAAGACAAGCTATGATTTACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCTGATCTCCTCATCCCAACTTCACTCACGCCTCCTTCTTCTCGCTCTCCATTGGATGGTGGTTTCAATCTGAGGTTATCAAGCAGCAACACTGATCCAGAGCCAGGTAGGTGCAGAAGAACAGATGGTAAAAAATGGAGATGTTCTAGAGATGTGGCCCCTAACCACAAGTATTGTGAGCGCCATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCAGACCAATAGCCTCCAAATCAAAAGGGCTCGCCATGATTCCAATCCTTTTCCTTCACCTGATGTTTCAGTGGCTATTTCTAACCACACTACCACAAAAGATGGATCTTCATCCCATTTTCTTGCCTCTACTACCACTCATCCATACCTTGAATCTTCCCTTTCTCTTGATAACAATTTTGGTGTCAAAGCTGCAAATTTTGACTCCGTGGCTTCTGTTTCTTCTAATAAGGAACGCAGGGGCTTGGAGTGGATGCTGAATGGGGATCCTATTTCCCTAGGTGCTTCTAACTCAGAATGGCAATCTCTTATGCATAACAAAGTTGCAATGACCAGTGAAGGTTCCTGTAATAACACTGAGACACAATATCTGAATTCATTTGCACTCTATAGTTCTGGACTGGATCAACAGGATAGGCGCCTTCCAATGTTCCTAAATCCTCTTGTTCCCATGGAAAATCTCCAATCAGAGAAACCAAGGGGTTTCATTGATGCTTGGTCTAATGCAGAAACAGGTGAAGGTAATGCTAACACCAACAGCAAGAACTCTGCTGCATCAATTGGTAAATTATCCCTTTCTTCTCTTGATCTATCAATGGGGGGTGGAGGGGGTGGTGCTGTTCATGAAAACATGGGAACTATTGGAATGGGGTTGGGAATAATGGAGCCTGAAGGAAACACACACAATGATACTAAAATCTCTCTCTCAAATTGGCTCAACCCACCAGCATCTTGGGTGGCTTCAACACCTGGGGGTCCTCTAGCTGAAGTTCTAAGGCCAAGCACAGTCACTGCCACTAGTGATGCAACATCCAATCCATCCTCCCCAGTCATAACTCATGTTGATCCAAGTAGCCCTCTAGGAACAATGGTATCATCTCCATCTGGGGTTCTACAGAAAACACTTGCTACATTGTCTGATAGTAGTAGCAATAGCAGCCCAAGGATTGCATCATCAAGGGCCAATTCTGAGATTGCCTTGCTCAAGTTTCAATCAAATGTAAATTAA 1707 0.4435 MRGDFGVSDKEPNIKKSTSVVGLGVKSLEAFPNKMTMMVHHNHHHRSFSSPFDNDSSAGDADGPTTYMSFTNHINLVSDVPALGAAIDGGGAASSALIRPLQPFDISSAYTPAATTTFKSPAGGMAALGFPFTSAQWKELQRQAMIYKYMMASVPVPPDLLIPTSLTPPSSRSPLDGGFNLRLSSSNTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVQTNSLQIKRARHDSNPFPSPDVSVAISNHTTTKDGSSSHFLASTTTHPYLESSLSLDNNFGVKAANFDSVASVSSNKERRGLEWMLNGDPISLGASNSEWQSLMHNKVAMTSEGSCNNTETQYLNSFALYSSGLDQQDRRLPMFLNPLVPMENLQSEKPRGFIDAWSNAETGEGNANTNSKNSAASIGKLSLSSLDLSMGGGGGGAVHENMGTIGMGLGIMEPEGNTHNDTKISLSNWLNPPASWVASTPGGPLAEVLRPSTVTATSDATSNPSSPVITHVDPSSPLGTMVSSPSGVLQKTLATLSDSSSNSSPRIASSRANSEIALLKFQSNVN. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02668 568 Pfam QLQ 131 163 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g02668 568 ProSiteProfiles WRC domain profile. 189 233 IPR014977 -
Seca4g02668 568 MobiDBLite consensus disorder prediction 167 191 - -
Seca4g02668 568 ProSiteProfiles QLQ domain profile. 131 166 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g02668 568 PANTHER GROWTH-REGULATING FACTOR 5 93 421 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca4g02668 568 SMART QLQ_2 130 166 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g02668 568 Pfam WRC 190 232 IPR014977 -
Seca4g02668 568 MobiDBLite consensus disorder prediction 167 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02668 Seca-Chr4 45935429 45938645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02668 123 534 GRF Transcription Factor Family AT4G37740 33.176 5.13e-40 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca4g02668 WRC 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02668 - - gmx:100803096 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02668 4 45935429 45938645 Seca4g02668 4 45935429 45938645 ECH