Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02663 ATGGGTCATTGTTGCAGCAAAAACATTGCTGTCAACAACGAAACCGTCGCCGTCGATCACGGCCACAAAGGGCCTAATCATGCGGTATCGTCGCCTGCTCCTGCCGGAAACTCGGTTTCCGGCGCCAGTGATGCGACTCCCGGCAGGTACACTCCGGCGAACTCCTTCTCCACCAGCCCGTTTACCAGTCCTCTCCCGCCTGGTGTGGCGCCGTCGCCGGCCAAGACTCCTGGAAGGAAGTTCCGGTGGCCTTTGCCACCGCCGTCCCCGGCGAAGCCGATCATGGCGGCGTTGCTGAGGCGGCAGGGGAAGGCGAAACCGAAGGACGGGCCCATACCGGAGGAGCAAGGAGAGGGTGGGGAGGGAGAGAGGTCGTTGGACAAGAGCTTTGGGTATGGGAAGAATTTTGGGGCAAAGTTTGAGTTGGGGAAGGAAGTGGGTCGTGGACATTTTGGTCATACTTGTTGGGCCAAAGGAAAGAAGGGTGAACTCAAGGGACAATCAGTGGCTGTGAAAATCATATCCAAAGCTAAGATGACTTCGGCAATAGCAATTGAAGATGTTCGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATAGGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGTCAATAACGTCTACATAGTGATGGAGTATTATAGGCACATACAATCAATTGTTAAATTAGACATTTATTCTGAAGTATTGAGATATTCTTTTCTTGTCAGGTTGTGTGAGGGTGGAGAATTACTTGATAGAATTCTAGACAGAGGTGGAAGATACACAGAGGATGACGCTAAAGCTATTCTTGTACAAATTCTAAATGTAGTTGCCTTTTGTCATCTTCATGGAGTTGTTCACCGTGATTTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGTCTATCTGATTTTGTTAGGCCAGAGCAGCGCCTCAATGATATTGTTGGCAGTGCCTACTACGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGCAGACTTATGGAGTATTGGAGTTATATCATACATATTGTTATGCGGAAGTAGACCATTTTGGGCACGGACTGAATCAGGGATCTTCCGGTCTGTGTTAAGAGCAAATCCTAACTTTGACGATTCACCTTGGCCATCAATTTCACCAGAAGCTAAAGACTTTGTGAAGAGACTTTTGAACAAGGACCATAGGAAAAGGATGACTGCTGCTCAAGCACTAGCTCACCCGTGGTTGAGAAATGAAAAAAATGCCATTCCTTTAGATATTTTGATTTACAAGTTAGTCAAGTCATATGTGCGTGCCTCACCTTTGAAACGTGCAGCATTGAAGGCTCTCTCAAAAGCATTGACAGAAGATGAGCTTATCTACCTTAGAGCACAGTTTAGCCTCTTGGAACCTAAGGATGGTTGCGTTTCACTTGAGAATTTTAGAGTTGCTCTTATGAAAAATGCAACTGATGCCATGAAGGAATCGAGGGTCCCTGACATTTTAAATTTGATGGAGCCACTCTCCTATAAAAAAATGGACTTCGAAGAGTTTTGTGCCGCCGCAATCAGTATATACCAGCTGGAAGTTCATCCAGAATGGGATAGAATTGCTACCACAGCCTTTGAATATTTTGAGGAGGCTGGAAACCGTGTCATTTCAGTTGAAGAGTTAGCACAGGAGATGAGTTTGGGCCCTTCAGCTTACGCTGTAATGGGTGACTGGATCAGAAAATCTGATGGAAAACTAAGCTTGGTCGGATATACAAAGTTTTTGCATGGTTTCACAGTTCGTAGTTCAAATACAAGACACCGACAGCTAGCTTAA 1860 0.4527 MGHCCSKNIAVNNETVAVDHGHKGPNHAVSSPAPAGNSVSGASDATPGRYTPANSFSTSPFTSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKDGPIPEEQGEGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHRNLVKFYDAFEDVNNVYIVMEYYRHIQSIVKLDIYSEVLRYSFLVRLCEGGELLDRILDRGGRYTEDDAKAILVQILNVVAFCHLHGVVHRDLKPENFLFVSKEEDAVMKVIDFGLSDFVRPEQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNAIPLDILIYKLVKSYVRASPLKRAALKALSKALTEDELIYLRAQFSLLEPKDGCVSLENFRVALMKNATDAMKESRVPDILNLMEPLSYKKMDFEEFCAAAISIYQLEVHPEWDRIATTAFEYFEEAGNRVISVEELAQEMSLGPSAYAVMGDWIRKSDGKLSLVGYTKFLHGFTVRSSNTRHRQLA. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02663 619 SUPERFAMILY Protein kinase-like (PK-like) 139 448 IPR011009 -
Seca4g02663 619 Pfam Protein kinase domain 232 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02663 619 Pfam Protein kinase domain 140 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02663 619 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 589 - -
Seca4g02663 619 Gene3D - 444 574 - -
Seca4g02663 619 Gene3D Transferase(Phosphotransferase) domain 1 229 437 - -
Seca4g02663 619 FunFam CDPK-related kinase 1 463 534 - -
Seca4g02663 619 Gene3D - 466 534 - -
Seca4g02663 619 MobiDBLite consensus disorder prediction 102 128 - -
Seca4g02663 619 Gene3D Phosphorylase Kinase; domain 1 136 226 - -
Seca4g02663 619 MobiDBLite consensus disorder prediction 31 63 - -
Seca4g02663 619 SUPERFAMILY EF-hand 460 605 IPR011992 -
Seca4g02663 619 MobiDBLite consensus disorder prediction 18 128 - -
Seca4g02663 619 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Seca4g02663 619 ProSiteProfiles Protein kinase domain profile. 140 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02663 619 CDD STKc_CAMK 139 426 - -
Seca4g02663 619 SMART serkin_6 140 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02663 619 FunFam CDPK-related kinase 1 133 226 - -
Seca4g02663 619 FunFam CDPK-related kinase 1 255 441 - -
Seca4g02663 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02663 Seca-Chr4 45824102 45831208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02663 1 610 EF-hand Containing Proteins AT3G50530 55.405 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g02663 Pkinase 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02663 - - var:108331904 1053.89