Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02658 ATGATGGAGGAAGATGAGAATATTCAAGCATCAAAAGGGAAAAATGTTGAAAGCTTTACCTGCTTAGAGCCACCTCAAAATCAAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTTAGCGATGAACAAATTAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAATTAGCAAGAGAACTTGGACTTCAACCTCGCCAAGTTGCTATATGGTTCCAGAACAAAAGGGCAAGGTGGAAATCAAAAAAGATAGAGCAAGAATACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCTCTAAAGGAAGAGAAAGAGTCTTTGCAATTAGAGTTGCAGAAGCTAAGTTATTTGATGGAAACATCTCATGATGGTGGAAGAGAAGGAAAGGTTGCCAAGGAATATAGCACAGAAGATGGTGGTTCAGGAAGTGGTGGATGCAGCAATTGCAGGGTTAAAGAAAAGCCAAGGTTTTCAAATGAGGGTTTGGAAGACAGAGTAGCTACGTATTCAGATGATCAAAATGAAAGTAGAAGAAGGACTGAGAAATCTGAGGACAGAGAACACCAACTTGTGAGAATGGATGATCATGCAGAGATTCCATTGACATCACTTGAAAAATGGTACAGTGTGGACCCAAGTGGTATCTTAGATCAGTCATGCAGCAGTTCCCAATGGTTAGATTTCTGGACTTGA 738 0.393 MMEEDENIQASKGKNVESFTCLEPPQNQKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARELGLQPRQVAIWFQNKRARWKSKKIEQEYRKLKDEYDNLASRFESLKEEKESLQLELQKLSYLMETSHDGGREGKVAKEYSTEDGGSGSGGCSNCRVKEKPRFSNEGLEDRVATYSDDQNESRRRTEKSEDREHQLVRMDDHAEIPLTSLEKWYSVDPSGILDQSCSSSQWLDFWT. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02658 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 188 IPR045224 GO:0003700
Seca4g02658 245 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Seca4g02658 245 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Seca4g02658 245 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Seca4g02658 245 SMART HOX_1 35 96 IPR001356 GO:0003677
Seca4g02658 245 MobiDBLite consensus disorder prediction 168 210 - -
Seca4g02658 245 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Seca4g02658 245 MobiDBLite consensus disorder prediction 1 39 - -
Seca4g02658 245 CDD homeodomain 38 93 IPR001356 GO:0003677
Seca4g02658 245 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Seca4g02658 245 MobiDBLite consensus disorder prediction 135 210 - -
Seca4g02658 245 SUPERFAMILY Homeodomain-like 24 93 IPR009057 -
Seca4g02658 245 Coils Coil 84 132 - -
Seca4g02658 245 Gene3D - 34 97 - -
Seca4g02658 245 MobiDBLite consensus disorder prediction 135 149 - -
Seca4g02658 245 MobiDBLite consensus disorder prediction 12 26 - -
Seca4g02658 245 FunFam Homeobox-leucine zipper protein ATHB-7 16 92 - -
Seca4g02658 245 Pfam Homeodomain 38 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02658 Seca-Chr4 45732818 45734498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02658 29 245 Homeobox Transcription Factor Family AT2G46680 42.918 3.74e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g02658 Homeodomain 5.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02658 K09338 - gmx:100499926 347.821