Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02648 ATGGGGGGTTCATCAGATACAAGGTTGCTGCAAGACCTGTTGTTGTACGCAGCAAGCGCGGCGCTGAGTTGCTTGGTACTGTTCGCGGGGCTCCGACACCTTGACCCGAACCGAGAGGCATCGAAGAAGGCTCTTGAGCATAAGAAGGAGATTGCAAAGCGTCTCGGTCGTCCCCTCATTCAGACCAACCCTTACGAGGATGTCATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTGATTCTGCCTCTAAAAAGACCTGACTTGTTTTCATATGGTAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCCCCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCAGGAGCAGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAATGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCTTATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTCTTGGGTCAGCGACGTACGACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTCTATGGGATGGATTTACCACAGATCAGAATGCTCGAGTTATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTAGGCGTTTTCCTCAAGCCTTTGAGATCGGAATTCCAGACCAGAGGGAGAGGGCTGACATATTGAAGGTTATCTTAAAGGGGGAGAGAGTTGAAGACAACATAGACTTTGATCATATAGCTGACTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCTGCCTATATTCCTATCAGAGAATTACTGGATGATGAGAAGAAAGGAAAACGATCTTCTGCGCCCAGACCTTTGTCACAACTTGATTTGGAGAAAGCACTTGGCACTTCACGGAAGACAAAGGTTGCTGCAAGTGAATATGGTGGATTAAACCTACAATCACCGTCAAGATGGACAGTGCATGGTGAGTCAGGTGATTATCCGCTTCAAGCTGCCATCAATGAATTCTCTAAGCTTGTGTCCTTCAAAATCCCACTCTACAATCACCATTTCCAGGAAAATCAACTCTACCGGAAAATCCTCACCTACCTCGATTCACTCCCTTCCGTCCAAGACTCCGATTTCACAAACCTCTTCTCCGGCCCCAATCCCTCTGACATCTTCCTCCACCTCGACGCCAACCACACCGTTCACGACACCTTCCTTGGCGCGAACCTCTCCTGGACCAACCACACCGCCGCCGGCGACTCCAACTCCGCGCTCGTGCTCAGAATCAAGAAGAAAGACAAGCGTAGGGTTTTCCGTCAGTACTTCCAGCACATTCTCTCGGTAGCAGACGAGATCGAACAGCGGAGGAAGAAGGATGTCAAGCTGTATTTGAATTCCGGCGCCGGCGAGATCTCGCCGTGGCGATCGGTGCCGTTCACGCATCCGGCGAGCTTCGAGACGGTGGCGATGGACGCGGAGCTGAAGAACAAGGTGAAATCCGATCTGGACCAGTTTCTCAAGTCGAAGCAGTACTACCACCGGTTAGGGCGTGTTTGGAAGCGGAGTTACCTCCTCTACGGTGCGTCCGGTACCGGAAAATCCAGCTTCGTCGCTGCGATGGCGAAGTTCCTCTGCTACGACGTCTACGATATAGATGTCTCGAAGGTAACGGACGGTTCTGATTGGAAGATTCTGCTGATAAAAACGACGCCGAAGTCGATGATCGTGATCGAGGACCTTGATCGCTTGATCAAGGGGAAATCAACGGGTGTGAGTTTATCGAGTGTGTTGAACTTCATGGACGGGATTGTGTCGTGCTGCGGGGAAGAGCGTGTGATGGTGTTCACGATGAACGGTACAAAAGATGAGGTTGATCAAACGGTGTTGAGGCCTGGGAGGGTTGATGTTCACATACACTTCCCCTTATGTGATTTCTCCACCTTTAAGATTCTCGCCAATAGTTATTTGGGGCTGAAGGAGCATAAGCTTTTCCCTCAGGTGGAGGAAGTTTTTCAGACCGGGGCCCGGCTCAGCCCGGCCGAGGTCGGTGAGATTATGATATCGAACCGGAACTCCCCGACTCGGGCTTTGAAAACCGTTATAACGGCTTTGCAGGTGCAGGTACAACCCAACGGCGGGGGACAGAGGTTGAGCCCAAGCGGGTCGGGTCGCGGATCAGATGAGATAAACGATACCAATGCTGTTATCTGTAGAGAAAGTGTTCACACGGTGAGGGAGTTCCGGAAGCTGTATGGGCTTCTGCGTTTGGGAAGTAGGAGGAAGGAGGAGCCCATCGATTCTTCGGGTCCCCTAGAGAAAGAAACTGCACGGATTGAGGGTCGGGTCGGATAA 2454 0.4976 MGGSSDTRLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRFPQAFEIGIPDQRERADILKVILKGERVEDNIDFDHIADLCEGYTGSDLFDLCKKAAYIPIRELLDDEKKGKRSSAPRPLSQLDLEKALGTSRKTKVAASEYGGLNLQSPSRWTVHGESGDYPLQAAINEFSKLVSFKIPLYNHHFQENQLYRKILTYLDSLPSVQDSDFTNLFSGPNPSDIFLHLDANHTVHDTFLGANLSWTNHTAAGDSNSALVLRIKKKDKRRVFRQYFQHILSVADEIEQRRKKDVKLYLNSGAGEISPWRSVPFTHPASFETVAMDAELKNKVKSDLDQFLKSKQYYHRLGRVWKRSYLLYGASGTGKSSFVAAMAKFLCYDVYDIDVSKVTDGSDWKILLIKTTPKSMIVIEDLDRLIKGKSTGVSLSSVLNFMDGIVSCCGEERVMVFTMNGTKDEVDQTVLRPGRVDVHIHFPLCDFSTFKILANSYLGLKEHKLFPQVEEVFQTGARLSPAEVGEIMISNRNSPTRALKTVITALQVQVQPNGGGQRLSPSGSGRGSDEINDTNAVICRESVHTVREFRKLYGLLRLGSRRKEEPIDSSGPLEKETARIEGRVG. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02648 817 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 344 - -
Seca4g02648 817 Gene3D - 80 338 IPR027417 -
Seca4g02648 817 Gene3D - 510 673 IPR027417 -
Seca4g02648 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 740 IPR027417 -
Seca4g02648 817 MobiDBLite consensus disorder prediction 744 764 - -
Seca4g02648 817 MobiDBLite consensus disorder prediction 795 817 - -
Seca4g02648 817 Gene3D - 674 739 - -
Seca4g02648 817 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Seca4g02648 817 CDD RecA-like_ATAD1 85 250 - -
Seca4g02648 817 Pfam Domain associated at C-terminal with AAA 373 449 IPR025753 -
Seca4g02648 817 Gene3D - 253 335 - -
Seca4g02648 817 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Seca4g02648 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Seca4g02648 817 Pfam AAA+ lid domain 274 309 IPR041569 -
Seca4g02648 817 MobiDBLite consensus disorder prediction 744 763 - -
Seca4g02648 817 SMART AAA_5 553 678 IPR003593 GO:0016887
Seca4g02648 817 SMART AAA_5 118 254 IPR003593 GO:0016887
Seca4g02648 817 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Seca4g02648 817 Pfam ATPase family associated with various cellular activities (AAA) 558 676 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02648 Seca-Chr4 45551040 45569757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02648 81 316 Calmodulin-binding Proteins AT3G56690 34.711 5.14e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02648 K22530 K08900 gmx:100797983 720.694