Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02625 ATGGGTAGCTTCAGCGAAGACGAGGAATGTCGCTTTTTCGATGCTCAAGAGGATGTTGTGTCCATTGGAGATGCAAAATCAGATGGTGATGGTGATGGTGATGAAGGGGTATCCGTTGGTTTTGATTATGATGTGTGGATTCGTAGCCCAAGGAGTGTTAGAGAACGTAGGAGAAAGTTTATGAAGAGGATGGGACTTAGTATGGATCAGATTGCACTTGAAAATTCTATAGATGTGTGTAGTGTTGAGAGGGATGGGGTGATGGATAGGGTAGAAGATAGTAGTGGGGCTGTGACCAGAACTTGTAGTTTTGAAGAGGAGTTCTGTTCAAGTAGGTCGTCAATGTCATGTTGCCTTAGTGTGAATTCTTCAGGGGAGTTTGGTTCAGTGGAGAAGTTGCCATGTGAAAATGGGAATTTGGAGAAGGGAGTTAGGAGTAATGTGGATGAGGAGGGGCAACAGCATAGGAAGATGGTTGGTGAAAGAGATCAGGGTTCAGATCAGTTGATGGTTGCGCAGGAACCTGAGGATTGTGAGAATGCCTCTGGGGTGTCTCCTTCCCAACGTTTGGTGAGTAGGGAGTTTGAGGAGAAGGATGCTGATGCTGTTGCAAGGAGGATGAACAAGGCTAGAAGGGGTTGGCTCAGAAGATTGCGGTCAATAACCTGTATGGTTGATAGGCAAGGGAAAGGTGATAATGGGGGAGATGGCAATTGTGCAATCTCAGGGTGCAAGCTTCAGAGAGTTAAGGTCCGTCCATACAAGAAGCAAATGAAGGAACTTTCAGCACTTTACATGAGGCAAGATATCCAAGCGCATGAAGGTTCTATTTTAACCATGAAATTTAGTCCTGATGGGCAGTATCTTGCCAGTGGTGGTGAAGATGGTGTTGTGCGATTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAATTGACATTCCACAAATTGACCCATCCTGTATTTACTTTACAGTGAATAATCTCTCTGAATTGACACCACTGTTTATGGATAAGGAAAAGATTAGCAAACTGAAGAGCATGAAAAAAACATCAGAATCAGCTTGCATTGTTTTCCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCATTGCGTGAGTTCCATGGACATAGAAGTGAAGTTTTGGATCTGTGTTGGTCAAATAATAATTATCTTCTATCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTGAATCATGACCATTGCTTGAAAGTCTTTTCACACAGCAATTATGTGACATGCGTACAGTTCAATCCTGTGGATGATAATTATTTCATCAGTGGATCTATAGATGGAAAAGTACGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGACTGATATCAGAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGCAGGGAGGGATTATTGGCTCCTTGGCAGGCAATTGTCGGTTTTACAATGTATCAGAGAATCGCTTGCAGTTAGATTCCCAAATATGCTTAGTTGGTAAAAAGAAACTTACTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCCCAAGATTCTAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTCAGAATCCTTGATGGGCTTAATGTGATTGGCAAATACAAAAGTCTCAACACGGGGAGCCCAATGCATGCATCAATTACTTCTGATGGGAAACATATTTTATCAGCATGTGAGGACTCTAATGTATATCTATGGAACATTAGTCAGGAAGAGTCTAATCCCATGAAAGCTAAGAAGATTAGGTCTTGTGAGCGGTTTTTCTCAAATGCATCCGTTGCAGTACCTTGGCATGGTTTGAAATCTCAAGTTACTGAAAATAAACATCAATTGGATGTCTTGGATAAAAAATCGGCTGTACACCTCAATCCACCTGCTTCGTTCTCTTTGGGCCGAGAGTTTTTCTTGGAGTCTTTTCCCAAGGGATCCGCAACATGGCCTGAGGAGAAGCTTCCTGTTTCAAGCGCCAAGGCTAAATCATCAGCTTTGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCTGTGCTCATGCATGGGGCATGGTCATTGTGACTGCAAGCTGGGATGGGAGGATAAAATCATTCCACAATTATGGGTTACCTGTACCCGTTTGA 2169 0.4278 MGSFSEDEECRFFDAQEDVVSIGDAKSDGDGDGDEGVSVGFDYDVWIRSPRSVRERRRKFMKRMGLSMDQIALENSIDVCSVERDGVMDRVEDSSGAVTRTCSFEEEFCSSRSSMSCCLSVNSSGEFGSVEKLPCENGNLEKGVRSNVDEEGQQHRKMVGERDQGSDQLMVAQEPEDCENASGVSPSQRLVSREFEEKDADAVARRMNKARRGWLRRLRSITCMVDRQGKGDNGGDGNCAISGCKLQRVKVRPYKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEIDIPQIDPSCIYFTVNNLSELTPLFMDKEKISKLKSMKKTSESACIVFPPKIFRLLEKPLREFHGHRSEVLDLCWSNNNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWTDIRDIVTAVCYRPDGQGGIIGSLAGNCRFYNVSENRLQLDSQICLVGKKKLTGRGITGFQFLPQDSNKVMVTCADSQVRILDGLNVIGKYKSLNTGSPMHASITSDGKHILSACEDSNVYLWNISQEESNPMKAKKIRSCERFFSNASVAVPWHGLKSQVTENKHQLDVLDKKSAVHLNPPASFSLGREFFLESFPKGSATWPEEKLPVSSAKAKSSALHKSEYKFLKSSCKSTSCAHAWGMVIVTASWDGRIKSFHNYGLPVPV. 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02625 722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 446 - -
Seca4g02625 722 Gene3D - 508 714 IPR015943 GO:0005515
Seca4g02625 722 Gene3D - 3 314 IPR015943 GO:0005515
Seca4g02625 722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Seca4g02625 722 Pfam WD domain, G-beta repeat 271 301 IPR001680 GO:0005515
Seca4g02625 722 Pfam WD domain, G-beta repeat 411 446 IPR001680 GO:0005515
Seca4g02625 722 Pfam WD domain, G-beta repeat 369 404 IPR001680 GO:0005515
Seca4g02625 722 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Seca4g02625 722 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Seca4g02625 722 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Seca4g02625 722 SUPERFAMILY WD40 repeat-like 265 712 IPR036322 GO:0005515
Seca4g02625 722 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 446 IPR001680 GO:0005515
Seca4g02625 722 Gene3D - 365 507 IPR015943 GO:0005515
Seca4g02625 722 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 374 407 - -
Seca4g02625 722 SMART WD40_4 367 405 IPR001680 GO:0005515
Seca4g02625 722 SMART WD40_4 408 447 IPR001680 GO:0005515
Seca4g02625 722 SMART WD40_4 449 488 IPR001680 GO:0005515
Seca4g02625 722 SMART WD40_4 263 302 IPR001680 GO:0005515
Seca4g02625 722 SMART WD40_4 540 580 IPR001680 GO:0005515
Seca4g02625 722 SMART WD40_4 499 539 IPR001680 GO:0005515
Seca4g02625 722 SMART WD40_4 677 714 IPR001680 GO:0005515
Seca4g02625 722 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 414 IPR001680 GO:0005515
Seca4g02625 722 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 303 IPR001680 GO:0005515
Seca4g02625 722 PANTHER WD REPEAT DOMAIN 44 5 719 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02625 Seca-Chr4 44972380 44977882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02625 - - gmx:100817209 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02625 4 44972380 44977882 Seca4g02625 4 44972380 44977882 ECH
Seca12g06265 12 154520571 154525798 Seca4g02625 4 44972380 44977882 PCT