Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02594 ATGGATAGTTCGCCATGGGAGGGTTTCTTCGAGTTTAATTGGACAAAACAGTTACCATACCAAAGCAAGCATCTTTGCTTCAACGAGTTCACCGACCTTGAAAATTTCACCTTCGACTTCAATCTCCCACCCCTTTATGAAGATTTTGAGGTCGACCAAAAGCCCCTCAACATTGTTGTGCCCAACCAGGGACATAGCAATAATGAGAGTGATTTTGTAACTTTTGTGAAGAAAGAGGAGAATCAAGAGGTGTCATTAGCATTGCAAGTGACTAATAGCAATAGGAAGAAGAGGTCTGATTCATTGGAATTTGATGAGATAAAGAAGCATTTTGGTGTTCCAATAACAAAAGCAGCAAAGGAAATGAATGTGGGATTAACCCTATTGAAGAGAAGGTGCAGGGAGCTCAACATTAGGAGATGGCCTCACAGAAAGCTTAAGAGCTTGAAGTTACTCATTGACAACGTTAAGGAATTGGGTTTGGCAAACGAGGTTGCTATGTTGGAGAAACACAAGATGATGTTGGAGAAACTACCGGGAATGGAACTGAATGAAGAAACCAAGAAGCTGAGACAGGCTTGTTTTAAAGCTAATTATAAACGAAGAAGATATTTGGCTTTACAAGCTTGA 630 0.4032 MDSSPWEGFFEFNWTKQLPYQSKHLCFNEFTDLENFTFDFNLPPLYEDFEVDQKPLNIVVPNQGHSNNESDFVTFVKKEENQEVSLALQVTNSNRKKRSDSLEFDEIKKHFGVPITKAAKEMNVGLTLLKRRCRELNIRRWPHRKLKSLKLLIDNVKELGLANEVAMLEKHKMMLEKLPGMELNEETKKLRQACFKANYKRRRYLALQA. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02594 209 Pfam RWP-RK domain 102 149 IPR003035 -
Seca4g02594 209 ProSiteProfiles RWP-RK domain profile. 89 170 IPR003035 -
Seca4g02594 209 PANTHER PROTEIN RKD4 74 204 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02594 Seca-Chr4 44510536 44511662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02594 100 206 AtRKD Transcription Factor Family AT5G53040 63.551 6.23e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca4g02594 RWP-RK 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02594 - - aprc:113850801 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02594 4 44510536 44511662 Seca4g02594 4 44510536 44511662 ECH