Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02589 ATGGGGAAGAAAGGAGGAAGCTGGTTCTCTTCAGTGAAGAAAGTTTTCAAGTCATCTTCTAAGGACTCGCCGGTGCCAGAGAAGAAGAATGAAGAGAAATGGCAGCATGAAGCACCAGAGGTTGTATCTTTTGAGCATTTTCCTGCAGATAGTTCTCCAGATATCACCAATGAGGGAAGTACTACATCAACACCAGTGACTGAAGACAGAAATCATGCCATTGCTTTTGCAGCAGCAACTGCTGCAGCTGCTGAAGCTGCTGTTGTAGCTGCTCATGCAGCAGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCACTCTAAAGAAGAAAAGGCAGCAACACTCATTCAATCATACTACAGAGGCTACCTTGTAAGACCCTCTTTTCTTGCACGACGTGCATTGCGTGCTTTGAAAGGATTAGTGAGGTTGCAAGCACTTGTGAGGGGATATAATGTGCGCAAGCAAGCACAGATGACAATGCGTTGCATGCAAGCATTAGTTCGAGTACAATCAAGAGTAAGAGCTCGTAGAATCCAATTGACTCAAGAGAAGCTTCACAGAACAGTGGAGGGGCACGAGCTTGAGGAACAAGATGCTACACTTATGAGCCCCCTCACAAAGTTAGATACCTATGGTTGGGATAATAGGCGTCAAAGTTGCCAGAAAATTAAGGAAAATGATTTGAGGAAACATGAAGCTGCAATGAAAAGGGAGAGAGCTCTTGCATACGCTTTCAACTGTCAGCAGCAGAAGCAATATTTGCATATGGACCCAAGTGGTGATGATATTGAAAACTGTGCCACTGAGCGTGAAAGAGCCCAATTGGATTGGAACTGGTTGGAGCGTTGGATGTCATCACAATCACAACATGTTAGGCATTTGGGGCCACGTGAGATGACTCTTGCTACTAGCGCCACAGATGACATGTCTGAAGAAAAGACGGTTGAAATGGACATGGTTGCACCTCAAGACTCAGCCCACCACAACATGGGCCTCATGAACCAAGACTTTCTTGATTCAAGCCCAATCTCTAACCGGCATCACCAGCGACAGCATAGTGTGCCTAGCTATATGGCCCCTACCCAGTCTGCAAAGGCCAAGGTTCGGAGTCAAGACCCATCTAAGCAACGGGCTTCACCTGGGCCTCAGTGGAACTCATCCACAAGGAGTTCTGCTATTGGGCTTGGCTGTGACTCATCTAGCTCTGGTGGGACAACTTCAGTCCATCCGTTTCTAAGGAGCCCAAGCCCAAAAATTAATGGGATTCGCCTCCAGTCTAGACGGATTTCTGGTGGCAGCCCAGAGAATGTTGGCGTTGAGGATTGGGCCATTCGGCTTGGAGCCCACGGCTGGGCATGA 1362 0.478 MGKKGGSWFSSVKKVFKSSSKDSPVPEKKNEEKWQHEAPEVVSFEHFPADSSPDITNEGSTTSTPVTEDRNHAIAFAAATAAAAEAAVVAAHAAARVVRLAGYGRHSKEEKAATLIQSYYRGYLVRPSFLARRALRALKGLVRLQALVRGYNVRKQAQMTMRCMQALVRVQSRVRARRIQLTQEKLHRTVEGHELEEQDATLMSPLTKLDTYGWDNRRQSCQKIKENDLRKHEAAMKRERALAYAFNCQQQKQYLHMDPSGDDIENCATERERAQLDWNWLERWMSSQSQHVRHLGPREMTLATSATDDMSEEKTVEMDMVAPQDSAHHNMGLMNQDFLDSSPISNRHHQRQHSVPSYMAPTQSAKAKVRSQDPSKQRASPGPQWNSSTRSSAIGLGCDSSSSGGTTSVHPFLRSPSPKINGIRLQSRRISGGSPENVGVEDWAIRLGAHGWA. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02589 453 MobiDBLite consensus disorder prediction 334 420 - -
Seca4g02589 453 MobiDBLite consensus disorder prediction 15 67 - -
Seca4g02589 453 Pfam IQ calmodulin-binding motif 110 126 IPR000048 GO:0005515
Seca4g02589 453 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Seca4g02589 453 Gene3D - 111 157 - -
Seca4g02589 453 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Seca4g02589 453 MobiDBLite consensus disorder prediction 53 67 - -
Seca4g02589 453 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Seca4g02589 453 SMART iq_5 108 130 IPR000048 GO:0005515
Seca4g02589 453 SMART iq_5 136 158 IPR000048 GO:0005515
Seca4g02589 453 MobiDBLite consensus disorder prediction 20 40 - -
Seca4g02589 453 Pfam Protein of unknown function (DUF4005) 337 381 IPR025064 -
Seca4g02589 453 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02589 Seca-Chr4 44419124 44423278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02589 1 419 IQD Protein Family AT3G49260 48.904 6.60e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02589 - - aprc:113873497 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02589 4 44419124 44423278 Seca4g02589 4 44419124 44423278 ECH