Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02571 ATGGAGTACGGTAGATTGGGACCCTCTGACCCTGGTGGCTCCTCGCGCTCCGATGCTCCTATTGTTACTCCAAGATCTTCTACCAAAAAGAAGATCATTTGGCTCTCACTCTTCGCCGTCGTCCTAATCGTCGCCTCCGTCGTATCCGCCGTAGTCCTCACCGCCGTCCGGTCCCGTTCTTCCGGCGAAGATCGAAACAGCCGTAGCCTCCTCCGCGGGAAGCCTACACAAGCGATTTCCCGCGCGTGCAGCAAAACGCGGTTCCCCACACTCTGCGTGAATTCCCTCCTCGAATTCCCAGGCTCCACGGTGGCATCAGAAAACGACCTCGTCCACATTTCCCTCAACATGACACTTCAGCACGTCACTAAGGCACTCTACTCCTCCGCCTCCATCAACGCCGCCATGGATCCCCGCGTCCGCGCTGCTTACGACGATTGCCTTGAACTCCTCGACGATTCCGTCGACGCCCTCTCTCGCTCCCTCAACTCCATCCTCTCCCCTTCTTCCCCCTCCGTCAGACCGCTCGGGTCCGATGACGTGCTGACGTGGCTCAGCTCCGCGCTAACCAACCAGGAGACGTGTACTGAGGGCTTCGCCGACACGAGCGGCACCGTCAAGGACCAGATGGCAAACAATCTCAAGGACTTGTCAGAACTCGTTAGCAACTGCCTCGCCATTTTCTCTAACGCCGGCCCTGGCGACGACTTCTCCGGCGTCCCCATACAGAACAAGAGACGGTTAATGGCAATGCGACACGATAATTTCCCGAGATGGTTGAGTAAACGAGAGAGGAGATTGCTGAGTTTGCCTGTGTCGGCGATGCAAGCCGATATTATCGTCTCGAAGGACGGTAACGGAACAGTGAAAACCATCGCTGAAGCCATTAAGAAGGTGCCGGAGTACAGTAACCGCCGCATCATTATTTACATCAGGGCAGGAAGGTACGAAGAGGATAATTTGAAGGTAGGAAGGAAGAAAACAAATGTGATGATCATAGGGGACGGCAAGGGCAAGACGGTCATCACAGGCGGCAAAAATGTTATGGATAACAAAACCACCACATTTCACAGCGCATCTTTTGCTGCTAGTGGTCCAGGTTTCATTGCAAGAGACATAACGTTCGAGAACTACGCCGGGCCGGGAAAACATCAAGCAGTGGCCCTCCGTGTCGGCGCAGACCATGCGGTGGTGTACCACTGCAGCATCATTGGGTACCAGGACTCAATGTATGTTCACTCCAACCGTCAATTCTACCGGGAATGTGACATTTACGGCACCGTTGACTTCATATTCGGCAACGCTGCAGTGGTTTTCCAAAACTGCAGCCTCTATGCTCGCAAGCCCATGCCCAGTCAGAAGAACACCATCACGGCCCAAAACAGAAAAGACCCAAATCAAAACACGGGTATGTCCATCCACAACTGTCGGATCCTGGCCACCCCAGATCTGGAACCAGTGAAGGGTAGCTACCCCACCTATCTGGGCCGTCCATGGAAACTATACTCTAGAACCGTCTACATGCAATCTTACATTGGAGATCACGTGCATCCACGTGGATGGTTGGAGTGGAATACATCCAACTTTGCTTTAGACACGTTGTACTATGGTGAATACATGAATTATGGGCCTGGTGCTGCCGTTGGGCAACGGGTAAATTGGTCTGGGTATCGGGTCATCACGTCCACATTGGAAGCAAGTAAATTCACGGTGGCCCAATTCATATCGGGCTCATCCTGGTTGCCCTCCACTGGAGTCGCATTCTTAGCGGGCTTATCCACCTGA 1785 0.535 MEYGRLGPSDPGGSSRSDAPIVTPRSSTKKKIIWLSLFAVVLIVASVVSAVVLTAVRSRSSGEDRNSRSLLRGKPTQAISRACSKTRFPTLCVNSLLEFPGSTVASENDLVHISLNMTLQHVTKALYSSASINAAMDPRVRAAYDDCLELLDDSVDALSRSLNSILSPSSPSVRPLGSDDVLTWLSSALTNQETCTEGFADTSGTVKDQMANNLKDLSELVSNCLAIFSNAGPGDDFSGVPIQNKRRLMAMRHDNFPRWLSKRERRLLSLPVSAMQADIIVSKDGNGTVKTIAEAIKKVPEYSNRRIIIYIRAGRYEEDNLKVGRKKTNVMIIGDGKGKTVITGGKNVMDNKTTTFHSASFAASGPGFIARDITFENYAGPGKHQAVALRVGADHAVVYHCSIIGYQDSMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPSQKNTITAQNRKDPNQNTGMSIHNCRILATPDLEPVKGSYPTYLGRPWKLYSRTVYMQSYIGDHVHPRGWLEWNTSNFALDTLYYGEYMNYGPGAAVGQRVNWSGYRVITSTLEASKFTVAQFISGSSWLPSTGVAFLAGLST. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02571 594 FunFam Pectinesterase 272 592 - -
Seca4g02571 594 NCBIfam pectinesterase inhibitor domain 63 230 IPR006501 GO:0004857
Seca4g02571 594 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Seca4g02571 594 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g02571 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 230 IPR035513 -
Seca4g02571 594 PANTHER PECTINESTERASE 44 582 - -
Seca4g02571 594 SMART PMEI_2 74 227 IPR006501 GO:0004857
Seca4g02571 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Seca4g02571 594 Gene3D - 272 592 IPR012334 -
Seca4g02571 594 FunFam Pectinesterase 75 231 - -
Seca4g02571 594 SUPERFAMILY Pectin lyase-like 273 591 IPR011050 -
Seca4g02571 594 CDD PMEI-like_3 82 230 - -
Seca4g02571 594 Pfam Plant invertase/pectin methylesterase inhibitor 78 227 IPR006501 GO:0004857
Seca4g02571 594 Pfam Pectinesterase 278 577 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02571 Seca-Chr4 44080464 44084988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02571 1 593 Carbohydrate Esterase AT5G53370 64.167 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02571 - - gmx:100808236 893.649