Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02562 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGGTGGGTGAGAATGACGAGTGCTCTTATGCTCGTAAGAAGAGGAAGACAAACGGGTACTACCCTCTGAACCTTCTCGGCGATGTCGCCAACGGTATAATCCCGGTGAGTTTTCACGGTCTTCTGAGTGCTGGTGTGACAGAGAAAGGATTCTCTGCATCGTGGTGCACCCAAGTTTCGTGCTCCCCTGGTGAAGTGGAATCGAACTCGAAGGGTGAGGCTGTTCCAGCGAAGAAAAACCAGGTTCAGCGGCCGCCACTGGTTCGGACTTCGAGGGGGCGAGTGCAGGTTCTCCCTTCTCGCTTCAATGACTCAGTTATTGATAATTGGAGGAAGGAGAGTAAGACCAACTTACGTGATTGTGATATCGAAGATGAATTTGAATGCAAGAGGGATAAGTTAAGCTTCAAGACACCCAAAACTTGCAACCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTCTAAACCTCGCAAGTACTCGGCATTGTGTGGGGATGATGTTGGTGTGAGGTATAAGAGTTTTGGTACGAGCAAACATTCAACTTTGCGTGGTGCATTGGCCTCGAGGCGTGAGATGTTTGTTGAGGATGAGAGAGGAAGGTTTTTGGAAGAGGATGGGGTTGATTTGATGGGGAATGATAGATTATTGAAGGAGAATGGGGAGAAAAAGGATGGGCTGTATGGACCAGAAGATTTTTATGCAGGTGATATTGTGTGGGCCAAAGCAGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTACGAGACAGGCACCTGAGCTGGTTCTGAGGTCTTTTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTATGCTGGGAGTGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCACGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAAGGGCAGTCTGAATTGAGTTTCTATAATCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAGGGCTTCACAGAGAGGTTGATAGCTGATATAAATGCAGCAGCTGGTAATGCTGGTTTTGATGATACTGTTCTGAAATCCTTTGAGGACGTAACTGGTCCAAACCAGTATGCTGGACATCACTTTTTGAAGCAGGATTTATTTGACAAGAAAGACACACGACCCTGTGAAGCCTGTGGATTGGGCCTTCCTTACAAGATGTCAAAGAAAACAAAGGATTCAACACCTAGTGGTCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCAGAATGCGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACCTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTCAGTTGTCTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCGCTTAGCGAATGGGAACGACACACGGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCACTGGAACAATGGATGCTGCAGTTGGCGGAATTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTACAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAGATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAAGCTTGTGAAAAACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTATCACAGGGCTCCAAATCCAGACACTGTTTTGATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGATCAAGGTTAATCTCATCCAACAGAATAAAGCAAGAAGACACTCCTGTTGATAATGTTGAGCATGACCCATTCTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAATCACACTAAAAAGAGAGCAGCAGATGAAGCCATTTTTCTTCAAGTGAGGGGTCACTACCATCATTCTTTAGATGCAATACAGCGTTTAAATACATACAGAGTGGTAGAGGAACCTCAGGCATTTTCTTCGTTCAGAGAACGCCTTTACCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGCGAAATGGTATGA 2883 0.4364 MIIKRNLKSQMPSLKRCKLGDPVGENDECSYARKKRKTNGYYPLNLLGDVANGIIPVSFHGLLSAGVTEKGFSASWCTQVSCSPGEVESNSKGEAVPAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTNLRDCDIEDEFECKRDKLSFKTPKTCNQNARKGRNDEKIGSKPRKYSALCGDDVGVRYKSFGTSKHSTLRGALASRREMFVEDERGRFLEEDGVDLMGNDRLLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPTRQAPELVLRSFIADAACVMFLGYAGSENQRDYAWVKHGTIFPFMDYVDRFQGQSELSFYNPSDFQMAIEEAFLADQGFTERLIADINAAAGNAGFDDTVLKSFEDVTGPNQYAGHHFLKQDLFDKKDTRPCEACGLGLPYKMSKKTKDSTPSGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHSVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHANALVSVKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACEKPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRIKQEDTPVDNVEHDPFSAARCRIFQRTNHTKKRAADEAIFLQVRGHYHHSLDAIQRLNTYRVVEEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMV. 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02562 960 Gene3D SET domain 837 960 IPR046341 -
Seca4g02562 960 CDD PHD_TCF19_like 451 501 - -
Seca4g02562 960 SMART PHD_3 644 691 IPR001965 -
Seca4g02562 960 SMART PHD_3 450 502 IPR001965 -
Seca4g02562 960 SMART PHD_3 755 811 IPR001965 -
Seca4g02562 960 Pfam PHD-zinc-finger like domain 698 810 - -
Seca4g02562 960 ProSitePatterns Zinc finger PHD-type signature. 645 690 IPR019786 -
Seca4g02562 960 Pfam PWWP domain 259 352 IPR000313 -
Seca4g02562 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 506 IPR013083 -
Seca4g02562 960 ProSiteProfiles Zinc finger PHD-type profile. 448 504 IPR019787 -
Seca4g02562 960 ProSiteProfiles PWWP domain profile. 258 327 IPR000313 -
Seca4g02562 960 SUPERFAMILY FYVE/PHD zinc finger 643 707 IPR011011 -
Seca4g02562 960 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 960 IPR025780 -
Seca4g02562 960 Pfam PHD-finger 657 691 - -
Seca4g02562 960 MobiDBLite consensus disorder prediction 85 105 - -
Seca4g02562 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 693 IPR013083 -
Seca4g02562 960 SUPERFAMILY SET domain 924 960 IPR046341 -
Seca4g02562 960 FunFam Histone-lysine N-methyltransferase 694 813 - -
Seca4g02562 960 SUPERFAMILY Tudor/PWWP/MBT 251 355 - -
Seca4g02562 960 CDD ePHD_ATX3_4_5_like 699 810 IPR041955 -
Seca4g02562 960 Pfam PHD-finger 450 503 IPR019787 -
Seca4g02562 960 Gene3D - 253 358 - -
Seca4g02562 960 CDD PWWP_AtATX3-like 257 361 - -
Seca4g02562 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 813 IPR013083 -
Seca4g02562 960 ProSiteProfiles Zinc finger PHD-type profile. 642 693 IPR019787 -
Seca4g02562 960 SUPERFAMILY FYVE/PHD zinc finger 448 505 IPR011011 -
Seca4g02562 960 FunFam Histone-lysine N-methyltransferase 632 693 - -
Seca4g02562 960 CDD PHD_ATX3_4_5_like 644 690 IPR042011 -
Seca4g02562 960 PANTHER PHD FINGER PROTEINS 13 523 - -
Seca4g02562 960 ProSiteProfiles Extended PHD (ePHD) domain profile. 696 811 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02562 Seca-Chr4 43836371 43844842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02562 645 810 C2H2 Transcription Factor Family AT3G14740 32.948 3.09e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g02562 zf-HC5HC2H_2 1.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02562 - - aprc:113853254 1805.03