Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02561 ATGTTATTTGTCATGGTATTTGTGAGCACAGTTTTGAATGCAAGCACACCGCTGATGAAGCCGTTCCTAAATCAAAGGATTCTTCTGGGATGGTTTCTGGTTCAGCTGTTTGCAAAATTTATCCTTCTTTGCTTTTATTGTGATTTGAAATGTGATTCTAACATTAGTGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGCATCGCAGATCTGAGAGAGGCACGCTATAGATCAGAAGGGAAAGACTGCTATCTGTTTAAAATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGGCTAATTAATCATTCTTGTATGCCAAATTGCTATGCTAGAATCATGAGTGTGGGTGATGATGAGAGCCGGATTGTACTCATTGCTAAGACTACCGTATCTGCTGGCGATGAGCTAACGTATGACTATTTATTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 522 0.4061 MLFVMVFVSTVLNASTPLMKPFLNQRILLGWFLVQLFAKFILLCFYCDLKCDSNISVLEYRGEQVRRSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTTVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02561 173 Gene3D SET domain 44 173 IPR046341 -
Seca4g02561 173 SUPERFAMILY SET domain 20 170 IPR046341 -
Seca4g02561 173 ProSiteProfiles Post-SET domain profile. 157 173 IPR003616 -
Seca4g02561 173 SMART PostSET_3 157 173 IPR003616 -
Seca4g02561 173 FunFam Histone-lysine N-methyltransferase 43 173 - -
Seca4g02561 173 ProSiteProfiles SET domain profile. 53 148 IPR001214 GO:0005515
Seca4g02561 173 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 57 173 IPR044570 GO:0042800|GO:0051568
Seca4g02561 173 SMART set_7 34 154 IPR001214 GO:0005515
Seca4g02561 173 Pfam SET domain 84 147 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02561 Seca-Chr4 43834675 43836052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02561 57 173 C2H2 Transcription Factor Family AT2G23740 35.075 7.07e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g02561 SET 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02561 - - bvg:104888258 239.195