Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02557 ATGTCGTCGACGTTGCTGGAAGTGACTCGGGCAGCACACGAGGAGGTGGAGCGGCTGGAGCGGCTGATAGTGAAGGACCTCCAGAATGAGCCGACAAACAACAAAGACCGTTTGTTTCAGAGTCACCGTGTCAGAAACATGATCGACACCATTTCCTCCACCACTGAAAAGCTTATTGAGATATACGAAGATAACGACAATGCAAGGAAGGATGAGATTGCTGCATTGGGAGGTCAAACTGCTACTGGAATTAACGTTTTTAGTGCCTTCTACGATAGACTCAAAGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGACGCTAATGACGATTGTGAAGCACTTCTTAAAGAGGAACCTCCAATTGAGTTCAGTGGAGAGGAAGCTTTTGGTCGATACTTAGACATGCATGAATTGTACCATCAGTATATCAATTCTAAATTTGGGGAGCCAATTGAGTATTCTGCATATCTTGATGTTTTTTCAGACACAGATAAGATTCCGCGCAAAATGAAAATGACCAGGCAGTACAGAGAATACCTTGAGAACCTTTTGGAATATCTGTTATACTTTTTCCAGCGGACAGAACCCCTGCAAGATCTTGATCGGATTCTCTCAAAGGTCACAACTGAGTTTGAAGAAAATTGGGCTGCTGGAAAGGTTCAGGGATGGGAGAAAGACAATCAAGAGAATGGACACGTACCTGCTCAGCACACTGCAATAGATCTAGATTATTACAGTACAGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGCTAAAGGAGGCACTGGCTGTGTTGGGACTTAAGACTGGTGGTACTGTTCAGCAACGTGCAGAGAGGCTTTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAAGAAACATTTTGCTAAAGGGGCACGTGGGTTAGAAAAAAATGGGGTTGCTGCAATTCCACAAGAAGATGGAAATTCAAAAGAAATTGCATTAATGGAGGTCAAAATGAAAAAACTGTGTGATTTGTTAGAAGAGACAATTGCTCGAACAAAAGACAATATTGTAAAGAAGCAAGCCCTGACATATGAGGAAATTGAAGCAGAACGCGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGAGGAGCAGCAAATTTATAATCCCCTAAAATTGCCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTCAAATGTGAGATATGCGGGAACTACAGTTATTGGGGGCGGCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGCCTTGGTATACCAAATACAAAGAACTTCAATGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGATTTACAGCGCCAGGGACTGATATGA 1530 0.434 MSSTLLEVTRAAHEEVERLERLIVKDLQNEPTNNKDRLFQSHRVRNMIDTISSTTEKLIEIYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDCEALLKEEPPIEFSGEEAFGRYLDMHELYHQYINSKFGEPIEYSAYLDVFSDTDKIPRKMKMTRQYREYLENLLEYLLYFFQRTEPLQDLDRILSKVTTEFEENWAAGKVQGWEKDNQENGHVPAQHTAIDLDYYSTVEELMEVGPERLKEALAVLGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFAKGARGLEKNGVAAIPQEDGNSKEIALMEVKMKKLCDLLEETIARTKDNIVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02557 509 MobiDBLite consensus disorder prediction 363 383 - -
Seca4g02557 509 MobiDBLite consensus disorder prediction 363 382 - -
Seca4g02557 509 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Seca4g02557 509 PANTHER SPLICING FACTOR SF3A-RELATED 244 312 - -
Seca4g02557 509 Pfam Replication stress response SDE2 C-terminal 223 304 IPR025086 -
Seca4g02557 509 Coils Coil 353 380 - -
Seca4g02557 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Seca4g02557 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Seca4g02557 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02557 Seca-Chr4 43793514 43803352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02557 1 509 C2H2 Transcription Factor Family AT5G06160 76.031 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02557 K12827 - gmx:100815393 928.702