Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02554 ATGAACATTCCCAACCCCATTCTCACCCTCACCCTCTCCCTCTCCTTCCTCTTCCTCTTCAGCCCTCCTCTAAAACACCTCCTAGTGGTACTAGCAACCATAGAATTAGAAACATGCTTGGACAGTGTTTGCCAGGCAAAGGAGCCAATAATCCGATTCCCCTTCCATATAGAGGGAAAGCAGGAAAAAACATGTGGATACCCAGGGTTCAAGCTATCCTGCAGTGAGAAAGGCCAAACACTGCTCAACCTACCTTACACCGGAGGAGAACTCAGTATCCAAGCAATAAACTATGCCGCTCAACAACTATGGCTGAATGACCCTAACAATTGCCTCCCAAAACGCATTCTCTCCCTCAACCTCTCTGCCTCTCCATTCGACGCCGTTTACTACCAACAATTCACCTTCTTCAACTGCTCCTCCAACTTAGAGTACCTCAAGTATCGATACAAACCCATAGCTTGCCTCAGCGATTCTTCTAATAAGTACATCGTTTTCGCAACGCCTTCCCCCTCTGTGTTCGCGCACTTGTCCTCCGTTTGCGATTTGGTCCACACTGTGAGGGTGCCCGTTCAGTCGCCGTTTTACGATCATGTGTTGTCGTCTGACCTCACCGACGACCTCCGCCTCTCGTGGGATTCGCCGTCGTGTGGGAGGTGTGAGTCTCACGGTGGCCGCTGTGGATTCAAAAACGACACAGCGTTTGAACTCGCCTGTTTCGATGTCCCTTCACCAGGTGGATTTCCATTGGTGCAACTTACGTCTTAG 768 0.5013 MNIPNPILTLTLSLSFLFLFSPPLKHLLVVLATIELETCLDSVCQAKEPIIRFPFHIEGKQEKTCGYPGFKLSCSEKGQTLLNLPYTGGELSIQAINYAAQQLWLNDPNNCLPKRILSLNLSASPFDAVYYQQFTFFNCSSNLEYLKYRYKPIACLSDSSNKYIVFATPSPSVFAHLSSVCDLVHTVRVPVQSPFYDHVLSSDLTDDLRLSWDSPSCGRCESHGGRCGFKNDTAFELACFDVPSPGGFPLVQLTS. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02554 255 Pfam Wall-associated receptor kinase galacturonan-binding 39 107 IPR025287 GO:0030247
Seca4g02554 255 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 241 IPR046948 -
Seca4g02554 255 Pfam Wall-associated receptor kinase C-terminal 176 240 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02554 Seca-Chr4 43753506 43756152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02554 37 240 C3H Transcription Factor Family AT2G46495 36.715 1.05e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02554 - - gmx:100818969 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02554 4 43753506 43756152 Seca4g02554 4 43753506 43756152 ECH