Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02545 ATGGAGACTTATTTGGTAATAATAGTATCCTCTTTCATTAGATTAATCTTGTTTTTCATGGAAGTAGAGCCTGCAGTTGCACTTAACTGTCCTGAATTATGGTGCGGAAATCAGGTGGTTCGATTCCCGTTCCGAATCAAAGGCCGGCATCCACCACTCTGTGGCTATCCGGGCTTTGATTTATTTTGTTCCTCAACGAATGAGACTGTGATTCAACTACCTAAGTCAGTGAAGCTCAATGTTAACCATATTAACTATACACAACAAACTATTGAATTATCTGATCCACATGGCTGCCTTCCCAGACACCTCCCCAACCTCACTCCTTCAGCTTCCCACTTCCAGTTCCAGCAGCCCTACTACTATTATGATAGCTATTTCTTTTTCAACTGTTCACCGATGAACAGAGATACTATAGACTACTATTTGGTTCCATGCCTAACCACCTCTACCTCTCAAACATACGCCATTCCCTCTAGTAGAACCATTGACTACCTGCCCCTGTTTTTTTGCACCAAAATGTTTAATATCTCATCCTTCCCTTTTGATTTTAATTCCGAGGACAACGTTCTTCGTTTGACATGGTCTGAGCCAAAGTGTAAACATTGCGAATCAAAAGGGAACAGGTGTGGGTGGAAGAATAATACCGCCAACAATGAAATATATTGTTTCGCCAATCACAAAGGTTCATCAACAGCTCTAGTGACCATAGCAGGATCAGTCCTAGGATCGTTGTTTTTTGTCCTGTTGACAGGTGCAGTCTACCACATCTATGACTCTTACATACTCAAGAAAGAAAAACAAGCAATTATTGAAAAATTTCTACAAGACTACAGAGCTCTTAAGCCCACCAGATACTCTTATGTGGAAATTAAGAGAATCACCAATAATTTTAAGGAAAAGTTAGGACAAGGAGCCTATGGAGCTGTGTTTAAAGGAAGCATTTCAAAAGAATTTACTGTTGCTGTCAAGATCCTCAATGTTTCCCTAGGAAATGGGGAAGAGTTCATTAATGAAGTTGGGACAATGGGTAGAATTCACCATCTTAACATTGTTCGCTTGGTCGGTTTCTGTGCCGATGGCTTTAAAAGAGCTCTTATTTATGAGTTCTTACCAAATGGTTCATTGCAGAAGTTCATAAACTCACCAGATAACAGGGAAAACTTCCTTGGTTGGAAAAGGTTGCATGAAATTGCTTTAGGTGTAGCCAAAGGAATTGAGTATCTTCATCAAGGCTGTGATCAGCGTATTCTCCATTTTGATATCAAACCTCAAAATGTGTTACTAGACCAAAACTTTACTCCAAAAATATGTGACTTTGGTCTAGCTAAATTGTGTTCAAGAGATCAGAGCATAGTGTCCATGACTACAGCTAGAGGAACTTTGGGCTACATTGCTCCTGAAGTTTTCTCAAGAAACTTTGGAAATGTATCCTACAAATCAGATGTGTATAGTTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACAGAGGACTTGGAGGAAAACACTAGCCATGTTTACTACCCAGAATGGGTTCATAATCTTTTAGAAGAACATGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAAAGATTGCAAGGAGACTGGCAATTGTGGGACTTTGGTGCATCCAATGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACATAGACAGATCCCCAATACCTCCTAATCCTTTTGCTTCAGCAGGACAAAGGAGAAAAGGTGCAAGTGCAACTGTGGGTGCGCCGGCTAGGCAGCTGACCCAAAATTTAGAAGTAATCCAAGAGTTAGATTAA 1842 0.4045 METYLVIIVSSFIRLILFFMEVEPAVALNCPELWCGNQVVRFPFRIKGRHPPLCGYPGFDLFCSSTNETVIQLPKSVKLNVNHINYTQQTIELSDPHGCLPRHLPNLTPSASHFQFQQPYYYYDSYFFFNCSPMNRDTIDYYLVPCLTTSTSQTYAIPSSRTIDYLPLFFCTKMFNISSFPFDFNSEDNVLRLTWSEPKCKHCESKGNRCGWKNNTANNEIYCFANHKGSSTALVTIAGSVLGSLFFVLLTGAVYHIYDSYILKKEKQAIIEKFLQDYRALKPTRYSYVEIKRITNNFKEKLGQGAYGAVFKGSISKEFTVAVKILNVSLGNGEEFINEVGTMGRIHHLNIVRLVGFCADGFKRALIYEFLPNGSLQKFINSPDNRENFLGWKRLHEIALGVAKGIEYLHQGCDQRILHFDIKPQNVLLDQNFTPKICDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDLEENTSHVYYPEWVHNLLEEHEEMRIHVDDEGDAKIARRLAIVGLWCIQWHAMDRPSMQMVVQMLEGDIDRSPIPPNPFASAGQRRKGASATVGAPARQLTQNLEVIQELD. 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02545 613 Gene3D Transferase(Phosphotransferase) domain 1 371 574 - -
Seca4g02545 613 Gene3D Phosphorylase Kinase; domain 1 270 370 - -
Seca4g02545 613 SUPERFAMILY Protein kinase-like (PK-like) 278 568 IPR011009 -
Seca4g02545 613 ProSiteProfiles Protein kinase domain profile. 296 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02545 613 FunFam PR5-like receptor kinase 371 578 - -
Seca4g02545 613 SMART serkin_6 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02545 613 Pfam Protein kinase domain 298 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02545 613 FunFam S-receptor-like serine/threonine-protein kinase 264 370 - -
Seca4g02545 613 MobiDBLite consensus disorder prediction 574 597 - -
Seca4g02545 613 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Seca4g02545 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Seca4g02545 613 PANTHER RUST RESISTANCE KINASE LR10-RELATED 267 585 IPR045874 GO:0004672
Seca4g02545 613 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02545 Seca-Chr4 43664207 43666553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02545 28 580 Receptor kinase-like Gene Family AT1G66910 37.318 9.64e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca4g02545 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02545 - - aprc:113873873 868.611