Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02543 ATGTATGACAGCATTGAAGATTTTCTACGAAGTGATAATAACATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAGGATAACAAAAGGATTCAAGACAAAACTAGGGAATGGAGGTTATGGCTCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTTTGGTAGCTGTCAAGTTATTAGATAAAGCCAAAGCCAATGGTCAAGAATTCATCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTTAATGTGGTGCAGCTTATTGGTTTTAGTGTGGAAGGATCAAAACGTGCTCTTATATACGAATTCATGCCAAATGGATCTCTTGAAAAGCACATTTTTTCTCATGAAGAGAGTTCTTCCTTAAGCTGTGAAAAATTGTACACCATTGCTCTTGGAGTGGCTCGTGGTATTGAATACTTGCACAATGGTTGCAATATGAAAATCCTTCACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAGAATTTCAACCCAAAAGTGTCTGATTTTGGACTTGCAAGACTTAGTCCTACAAATAATAGCATTGTGTCTTTGACTGCAGCAAGAGGAACCATAGGATACATGGCACCTGAGCTCTTCTACAGAAATGTTGGCACAATTTCATACAAAGCTGATGTTTATAGCTTTGGGATGTTATTAATGGAGATGGCTAGTAGAAGGAAGAACTTGAATGCATTGGCTGAGCAATCCAGCCAGATTTATTTCCCTTTCTGGGTTTATGATCAGATAAACAATGGACAGGAAATCCCAATTGAAAATGACACAGATGAGGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCATTATGGTGTATACAAACAAGGCCAAGTGATCGTCCTTCCATGGATAAAGTGTTAGAGATGCTTGAAGCAAGTGATGAATTACAAATGCCTAATAAGCCTTACCTATTTCCACAAGATATACCTTCAGAGGATGTAATACATCATAGCAGCTCAAGACCATCCTCTGAAAAATCAATGTGA 1017 0.3795 MYDSIEDFLRSDNNIMPIRYSYKDIKRITKGFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDKAKANGQEFINEVATIGRIHHVNVVQLIGFSVEGSKRALIYEFMPNGSLEKHIFSHEESSSLSCEKLYTIALGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLSPTNNSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAEQSSQIYFPFWVYDQINNGQEIPIENDTDEEMKLAKKMMIVALWCIQTRPSDRPSMDKVLEMLEASDELQMPNKPYLFPQDIPSEDVIHHSSSRPSSEKSM. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02543 338 MobiDBLite consensus disorder prediction 311 338 - -
Seca4g02543 338 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Seca4g02543 338 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02543 338 SMART serkin_6 30 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02543 338 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Seca4g02543 338 MobiDBLite consensus disorder prediction 324 338 - -
Seca4g02543 338 FunFam serine/threonine-protein kinase PBS1-like 3 104 - -
Seca4g02543 338 SUPERFAMILY Protein kinase-like (PK-like) 11 301 IPR011009 -
Seca4g02543 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Seca4g02543 338 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 325 IPR045874 GO:0004672
Seca4g02543 338 Gene3D Transferase(Phosphotransferase) domain 1 105 312 - -
Seca4g02543 338 FunFam PR5-like receptor kinase 105 310 - -
Seca4g02543 338 Pfam Protein kinase domain 33 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02543 Seca-Chr4 43659425 43660441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02543 19 328 Receptor kinase-like Gene Family AT5G38280 51.899 7.12e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca4g02543 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02543 - - psat:127093935 558.91