Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02542 ATGTATGACAGCATTGAAGATTTTCTACGAAGTGACAATAACATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAGGATAACAAAAGGATTCAAGACAAAACTAGGGAATGGAGGTTATGGCTCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTTTGGTAGCTGTCAAGTTATTAGATAAAGCCAAAGCCAATGGTCAAGAATTCATCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTTAATGTGGTGCAGCTTATTGGTTTTAGTGTGGAAGGATCAAAACGTGCTCTTATATACGAATTCATGCCAAATGGATCTCTTGAAAAACACATTTTTTCTCATGAAGAGAGTTCTTCCTTAAGCTGTGAAAAATTGTACACCATTGCTCTTGGAGTGGCTTGTGCAAGAGGAACCATAGGATACATGGCACCTGAGCTCTTCTACAGAAATGTTGGCACAATTTCATACAAAGCTGATGTTTATAGCTTTGGGATGTTATTAATGGAGATGGCTAGTAGAAGGAAGAACTTGAATGCATTGGCTGAGCAATCCAGCCAGATTTATTTCCCTTTCTGGGTTTATGATCAGATAAACAATGGACAGGAAATCCCAATTGAAAATGACACAGATGAGGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCATTGTGGTGTATACAAACAAGGCCTAGTGATCGTCCTTCCATGGATAAAGTGTTAGAGATGCTTGAAGCAAGTGATGAATTACAAATGCCTAATAAGCCTTACCTATTTCCACAAGATCTACCTTAA 804 0.3831 MYDSIEDFLRSDNNIMPIRYSYKDIKRITKGFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDKAKANGQEFINEVATIGRIHHVNVVQLIGFSVEGSKRALIYEFMPNGSLEKHIFSHEESSSLSCEKLYTIALGVACARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAEQSSQIYFPFWVYDQINNGQEIPIENDTDEEMKLAKKMMIVALWCIQTRPSDRPSMDKVLEMLEASDELQMPNKPYLFPQDLP. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02542 267 SUPERFAMILY Protein kinase-like (PK-like) 11 248 IPR011009 -
Seca4g02542 267 Gene3D Transferase(Phosphotransferase) domain 1 14 138 - -
Seca4g02542 267 Pfam Protein kinase domain 139 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02542 267 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 136 IPR045874 GO:0004672
Seca4g02542 267 Gene3D Transferase(Phosphotransferase) domain 1 139 259 - -
Seca4g02542 267 Pfam Protein tyrosine and serine/threonine kinase 32 138 IPR001245 GO:0004672|GO:0006468
Seca4g02542 267 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Seca4g02542 267 ProSiteProfiles Protein kinase domain profile. 30 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02542 267 FunFam serine/threonine-protein kinase PBS1-like 3 104 - -
Seca4g02542 267 PIRSF ILK 136 258 - -
Seca4g02542 267 PIRSF ILK 19 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02542 Seca-Chr4 43653769 43654731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02542 19 262 Receptor kinase-like Gene Family AT5G38280 42.574 6.42e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca4g02542 Pkinase 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02542 - - psat:127093935 426.787