Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02534 ATGAATTTTCATCAAGACAAATTTGTTAGATTTCGGGATTGGAATTCAGACAAGGGTTCTGAGAGCAACTCTCCTGCAATTCACATAACACGATCAGGGAGAATTAGAACTACACTAAATTCAGTTTCTGAGAAGTTCCAGAGGGGTTTGGAATCTAGTTCCGAGAGGATAAAGAGATATACAAAATCATTCAAATCTTTTCCCCAGAACAGCGTTGTTGCTAGATGTTTTAGTTCTAGAAAGAAGATCCTTGATCCTCAGGGCCCCTTCCTTCAAAAGTGGAACAAGATATTTGTGTTATCATGTCTTATTGCTGTATCACTTGATCCTTTGTTTTTCTATATCCCTGTGATTGATGATGACAAGAAATGCCTTTCACGGGACAGAAAAATGGAAACTACGGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCACATAGTTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCTAAGAGGTACCTGTCATCATACTTCCTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGATGAGAGGCTCTGAATCACTGAATACAAAGAACTTGCTGAAATTTATTGTTTTCTTCCAATATGTGCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTCCTCTACATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGACGCCTGCCGAAAAAATATCACATGTAACACGGCAGATATGTATTGTGATGATCATCATGGTTCGGGCACAATTTCAACATTCCTGAATACTTCTTGCCCAATACAGGATCAAAATACAACACTCTTTGATTTTGGAATTTTCCTTGATGCCCTTCAATCTGGGGTTGTGGAGTCAAGAGATTTCCCACAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTTCTCTTGGTCAGAACCTAGCAACAAGTACCTATGTTTGGGAAATTTGCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACACTTTGATACGTAATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTAATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTTTGGATGCAGTATGTGACCGTCTCAAGCCAGTGCTTTACACAAAAGAAAGCTGCATTGTCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAACTATTGACTGTGACAACTAATGGAGGAAGAACAGGCTTCTTTAACTCTGAATTCCTCAAAGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCCTTTGCTCTAAAAGCTGATGACTTGAAGTTTGTTGCATCTCAATTTCGGCGCCTTCACAGTAAGCAGATTCGCCACACTTTCAGGTTTTACTCACAACAATGGCGTACATGGGCTGCATGCTTCATACAAGCAGCCTGGAGACGCTATAGTAAAAGGAAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGCTGCAAGATGCATTAGCTAAGGCAGGTGGTAGCTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGATTTGCTGCTAATGCGCTTAGAGCCTTACGTAGAAATGGCACTAGGAAGACCAGGGTGCCAGAGAGAATACCACCCATGCTGCTCCAGAAGCCTGCTGAACCTGATTTTACTGCTGAAGAGCAATAG 2148 0.4139 MNFHQDKFVRFRDWNSDKGSESNSPAIHITRSGRIRTTLNSVSEKFQRGLESSSERIKRYTKSFKSFPQNSVVARCFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYIPVIDDDKKCLSRDRKMETTATVLRSFSDIFYIIHIVFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPKMRGSESLNTKNLLKFIVFFQYVPRFIRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRKNITCNTADMYCDDHHGSGTISTFLNTSCPIQDQNTTLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDTLIRNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAVCDRLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQIRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLKEEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGTRKTRVPERIPPMLLQKPAEPDFTAEEQ. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02534 715 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Seca4g02534 715 SUPERFAMILY cAMP-binding domain-like 415 608 IPR018490 -
Seca4g02534 715 Gene3D Helix hairpin bin 412 477 - -
Seca4g02534 715 ProSiteProfiles cAMP/cGMP binding motif profile. 486 570 IPR000595 -
Seca4g02534 715 Pfam Cyclic nucleotide-binding domain 506 597 IPR000595 -
Seca4g02534 715 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Seca4g02534 715 Coils Coil 638 658 - -
Seca4g02534 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 61 710 - -
Seca4g02534 715 CDD CAP_ED 486 617 IPR000595 -
Seca4g02534 715 SMART cnmp_10 486 617 IPR000595 -
Seca4g02534 715 Gene3D Jelly Rolls 484 604 IPR014710 -
Seca4g02534 715 SUPERFAMILY Voltage-gated potassium channels 85 408 - -
Seca4g02534 715 Pfam Ion transport protein 94 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g02534 715 Gene3D - 97 410 - -
Seca4g02534 715 ProSiteProfiles IQ motif profile. 622 651 IPR000048 GO:0005515
Seca4g02534 715 MobiDBLite consensus disorder prediction 687 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02534 Seca-Chr4 43590080 43597424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02534 1 714 Ion Channels AT5G53130 79.666 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02534 K05391 - gmx:100817516 1308.12